View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_57 (Length: 377)
Name: NF1408_high_57
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_57 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 97 - 369
Target Start/End: Complemental strand, 5032311 - 5032039
Alignment:
| Q |
97 |
cactgtaccttgtaggtacaatttgtggggagttcatggattggatctaactaaatacactagttagtattttatttaggaccaccattataccaataat |
196 |
Q |
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| T |
5032311 |
cactgtaccttgtaggtacaatttgtggggagttcatggattggatctaactaaatacactagttagtattttatttaggaccaccattataccaataat |
5032212 |
T |
|
| Q |
197 |
ttgtaaaccataaattattattattatacacaagtaattaatgctgataatattgaactaataagttaagtgcacatgaaaaggggttgattgcttgaat |
296 |
Q |
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| T |
5032211 |
ttgtaaaccataaattattattattatacacaattaattaatgctgataatattgaactaataagttaagtgcacatgaaaaggggttgattgcttgaat |
5032112 |
T |
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| Q |
297 |
tgtaccttgctaagcattgtggataatcattaggtctaaagagagaaaaataaataaatttaattcctatgct |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5032111 |
tgtaccttgctaagcattgtggataatcattaggtctaaagagagaaaaataaataaatttaattcctatgct |
5032039 |
T |
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Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 35277682 - 35277596
Alignment:
| Q |
2 |
ataaggggtactcttaactcataaaagatatcaaattttaaattaatggtaagaaacataaagggttaccccatcaatcagaataat |
88 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35277682 |
ataaggggtactcttaactcataaaagatatcacattttaaattaatggtaagaaacataaagggttaccccatcaatcagaataat |
35277596 |
T |
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