View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_high_6 (Length: 568)
Name: NF1408_high_6
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 51 - 340
Target Start/End: Original strand, 16562570 - 16562860
Alignment:
| Q |
51 |
cacagaacgagttgcatagtatacaatcaccggcagatgaaggacgtccggtgcttaggaggtaaaccccgttgttcaaaaaagaacaattaatgaacca |
150 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16562570 |
cacataacgagttgcatagtatacaatcatcggcagatgaaggacgcccgatgcttaggaggtaaaccctgttgttcaaaaaagaacaattaatgaacca |
16562669 |
T |
|
| Q |
151 |
attgtcatgtgtatggattgtacattccaacaagactatttagttactccatatacattaatttttcaactaccttaattatttacttccttagatcaca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16562670 |
attgtcatgtgtatggattgtacattccaacaagactatttagttactccatatacattaatttttcaactaccctaattatttacttccttagatcaca |
16562769 |
T |
|
| Q |
251 |
tttataagcagaaaaacaa-ttttttagatctatgtatctagtctatataaaaaccaaatacattagacattcaatgaacataaaatattg |
340 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16562770 |
tttataagcagaaaaacaatttttttagatctatgtatctagtctatataaaaaccaaatacattagacattcaatgaacataaaatattg |
16562860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 387 - 532
Target Start/End: Original strand, 16562907 - 16563051
Alignment:
| Q |
387 |
gttcttgcacaagttgtcgtcgtagaaatggttgttnnnnnnnnnnnnnnngggttattcttgtagcttacacgacaccgttttattttttaaaaagtga |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16562907 |
gttcttgcacaagttgtcgtcgtagaaatggttgttaaaaaaaaaaaaaaaggtttattcttgtagcttacacgacaccgttttattttttaaaaggtga |
16563006 |
T |
|
| Q |
487 |
tacgacaccgtatacgagttctttcttcttctctgagtggattcaa |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16563007 |
tacgacaccgtatacgagttctttcttcttctctgag-ggattcaa |
16563051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 8174100 - 8174133
Alignment:
| Q |
244 |
gatcacatttataagcagaaaaacaattttttag |
277 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
8174100 |
gatcacatttataagcaaaaaaacaattttttag |
8174133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 29398512 - 29398565
Alignment:
| Q |
282 |
atgtatctagtctatataaaaaccaaatacattagacattcaatgaacataaaa |
335 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
29398512 |
atgtatttagtctatatataaaccaaatacattatgtattcaatgaacctaaaa |
29398565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 47136606 - 47136634
Alignment:
| Q |
194 |
ttactccatatacattaatttttcaacta |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47136606 |
ttactccatatacattaatttttcaacta |
47136634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University