View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_62 (Length: 361)
Name: NF1408_high_62
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_62 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 41928794 - 41928438
Alignment:
| Q |
1 |
ggttagcctcagcggtaacaaagctaatgaattcagctgcatatttcaccataatttccttgctttcatcggttatctttgcatgtcttggtagagcttt |
100 |
Q |
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| T |
41928794 |
ggttagcctcagcggtaacaaagctaataaattcagctgcatatttcaccataatttccttgctttcatcggttatctttgcatgtcttggtagagcttt |
41928695 |
T |
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| Q |
101 |
tttcatcaatctatgcacattcgcaatgggaaaggctcttgaaaattcttcttgcaccctcgaatcagctggttgcactccatcctctaacatcaccaca |
200 |
Q |
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| T |
41928694 |
tttcatcaatctatgcacattcgcaatgggaaaggctcttgaaaattcttcttgcaccctcgaactagctggttgcactccatcctctaacatcaccaca |
41928595 |
T |
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| Q |
201 |
atattag------ttatatataattggcgtgaagcagcagt--tataannnnnnncaaaatccagacataaatgcttgatagcgataaataatagcactc |
292 |
Q |
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||| ||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
41928594 |
atagtagttattattatatataattggcgtgaagcagcagttatataatttttttcaaaatccaaacataaatgcttgctagctataaataatagcacta |
41928495 |
T |
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| Q |
293 |
taagatttactaatatgtttcatttcatgatatacattaaacagtttgagtatagta |
349 |
Q |
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| | |||||||||||||||| |||||||| | ||||||||||||||||||||||| |
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| T |
41928494 |
tttgttttactaatatgtttcttttcatgaacttcattaaacagtttgagtatagta |
41928438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 64 - 237
Target Start/End: Complemental strand, 41910792 - 41910619
Alignment:
| Q |
64 |
tttcatcggttatctttgcatgtcttggtagagcttttttcatcaatctatgcacattcgcaatgggaaaggctcttgaaaattcttcttgcaccctcga |
163 |
Q |
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| T |
41910792 |
tttcatcggttatctttgcatgttgaggaagagcttttttcatcaatctatgcacattggcaatgggaaaggctcttgaaaattcttcatgcaccctcga |
41910693 |
T |
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| Q |
164 |
atcagctggttgcactccatcctctaacatcaccacaatattagttatatataattggcgtgaagcagcagtta |
237 |
Q |
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| T |
41910692 |
actagctggttgcactccatcctctaacatcaccacaatagtagttatttataattggcgtgaagtagtagtta |
41910619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 41911045 - 41910977
Alignment:
| Q |
8 |
ctcagcggtaacaaagctaatgaattcagctgcatatttcaccataatttccttgctttcatcggttatcttt |
80 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41911045 |
ctcagcagtaacaaagctaatgaattcagctgg----ttcaccataatttccttgctttcatcggttatcttt |
41910977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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