View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_71 (Length: 338)
Name: NF1408_high_71
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_71 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 2699402 - 2699639
Alignment:
| Q |
11 |
gatgaatatgaatatgaatgtttcacctttgagtcgtctcttgtacctccataccaacaatacaatgattcctatgcaaattaaccccgctagagaagtt |
110 |
Q |
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| T |
2699402 |
gatgaatatgaatatgaatgtttcacctttgagttgtctcttgtacctccataccaacaatacaatgattcctatgcaaattaaccccgctagagaagtt |
2699501 |
T |
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| Q |
111 |
aatattatcaccatcataatcttttca---ttccctccatcgcctgtatttcgagacaaaagatataatcctgttattaactaatactctaacaacaatt |
207 |
Q |
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| T |
2699502 |
aatattatcaccatcataatcttttcatttttccctccatcgcctgtatttcgagacaaaagatataatcctgttatttactaatactctaacaacaatt |
2699601 |
T |
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| Q |
208 |
acacttcaattgacagtgttattcggctaattagctat |
245 |
Q |
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| T |
2699602 |
acacttcaattgacagtgttattcggctaattagctat |
2699639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 2691709 - 2691829
Alignment:
| Q |
17 |
tatgaatatgaatg----tttcacctttgagtcgtctcttgtacctccataccaacaatacaatgattcctatgcaaattaaccccgctagagaagttaa |
112 |
Q |
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| T |
2691709 |
tatgaatatgaatgagtatttcacctttgagttttgtcttgtacctccataccaacaataccaatattcctaggcagattaaccctgctataacagttaa |
2691808 |
T |
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| Q |
113 |
tattatcaccatcataatctt |
133 |
Q |
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| T |
2691809 |
tattatcacaatcataatctt |
2691829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 14520885 - 14520956
Alignment:
| Q |
57 |
ctccataccaacaatacaatgattcctatgcaaattaaccccgctagagaagttaatattatcaccatcata |
128 |
Q |
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| T |
14520885 |
ctccataccaacaatacaaagattcctaggcagattaaccctgttacagcagttgatataatcacaatcata |
14520956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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