View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_76 (Length: 321)
Name: NF1408_high_76
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_76 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0191 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 37575028 - 37575339
Alignment:
| Q |
11 |
cacagaagcaggtgagtctgatctttcaattgcaaacaatagtcatattttcccatatcaataaattttcagcatttttatggttgcagaattttacgca |
110 |
Q |
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| T |
37575028 |
cacagaagcaggtgagtctgatctttcaattgcaaacaatagtcatattttcccatatcaataaattttcagcatttttatggttgcagaattttacgca |
37575127 |
T |
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| Q |
111 |
aatgattttctcatgcatgcctagctagttagtatacacttgatttccttattttcagtaccttatctt-aaatgnnnnnnnnnnnnnccaataccttat |
209 |
Q |
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| T |
37575128 |
aatgattttctcatgcatgcctagctagttagtatacacttgatttccttattttcagtaccttatcttaaaatgtttttccttttttccaataccttat |
37575227 |
T |
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| Q |
210 |
cttaaatatttatcacaaatatctgaagattgctcacaatttcagaatttctttatatcgtgttacaatttgacagcgtcaggagctgtcagagggagaa |
309 |
Q |
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| T |
37575228 |
cttaagtatttgtcacaaatatctgaagattgctcacaatttcagaatttctttataccgtgttacaatttgatagcgtcaggagctgtcagagggagaa |
37575327 |
T |
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| Q |
310 |
gcatatgcaatt |
321 |
Q |
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| T |
37575328 |
gcatatgcaatt |
37575339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 321
Target Start/End: Original strand, 37588984 - 37589070
Alignment:
| Q |
234 |
gaagattgctcacaatttcagaatttctttatatcgtgttacaatttgacagcgtcaggagctgtcagagggagaagcatatgcaatt |
321 |
Q |
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| T |
37588984 |
gaagatcgctcacattttcagaatttatttatattgtgttacaatgtgatagcgtcaagagctggcag-gggagaagcatatgcaatt |
37589070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 37588842 - 37588902
Alignment:
| Q |
37 |
caattgcaaacaatagtcatattttcccatatcaataaattttcagcatttttatggttgca |
98 |
Q |
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| T |
37588842 |
caattgcaaagaataatcatattttcccgtg-caataatttttcagcatttttatggttgca |
37588902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 24002 - 23851
Alignment:
| Q |
11 |
cacagaagcaggtgagtctgatctttcaattgcaaacaatagtcatattttcccatatcaataaattttcagcatttttatggttgcagaattttacgca |
110 |
Q |
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| T |
24002 |
cacagaagcaggtgagtctgatcatcaaaatgcaaagaataatcatatttcccaatgtcaacaatttttcagcatttctatggttgcagaa-tttatgca |
23904 |
T |
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| Q |
111 |
aatgattttctcatgcatgcctagctagttagtatac---acttgatttcctt |
160 |
Q |
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| T |
23903 |
aatgattttctcatgcacgcctagctagttattatacagtacttgatttcctt |
23851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 23812 - 23746
Alignment:
| Q |
255 |
aatttctttatatcgtgttacaatttgacagcgtcaggagctgtcagagggagaagcatatgcaatt |
321 |
Q |
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| T |
23812 |
aatttcattatattctgttacaatgtgacagtgtcaggagctggcagagggagaagcatatgcaatt |
23746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 10438148 - 10438299
Alignment:
| Q |
11 |
cacagaagcaggtgagtctgatctttcaattgcaaacaatagtcatattttcccatatcaataaattttcagcatttttatggttgcagaattttacgca |
110 |
Q |
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| T |
10438148 |
cacagaagcaggtgagtctgatcatcgaattgcaaagaataatcatatttctcaatgacaacaatttttcagcatttctatggttgcagaattt-atgca |
10438246 |
T |
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| Q |
111 |
aatgattttctcatgcatgcctagctagttagtatac---acttgatttcctt |
160 |
Q |
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| T |
10438247 |
aatgattttctcatgcacgcctagctagttattatacaatacttgatttcctt |
10438299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 10438353 - 10438417
Alignment:
| Q |
255 |
aatttctttatatcgtgttacaatttgacagcgtcaggagctgtcagagggagaagcatatgcaatt |
321 |
Q |
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| T |
10438353 |
aatttcattatattgtgttaccat--gacagtgtcaggagttggcagagggagaagcatatgcaatt |
10438417 |
T |
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