View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_high_85 (Length: 309)
Name: NF1408_high_85
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_85 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 30 - 301
Target Start/End: Complemental strand, 39013318 - 39013047
Alignment:
| Q |
30 |
gtacatgtttatatctctctatatagaatgacactatacttcaatggcttataggaaatggaaattatatacggtttgcgagggcaaatggaacaacttt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39013318 |
gtacatgtttatatctctctatatagaatgacactatacttcaatggcttataggaaatggaaattatatacggtttgcgagggcaaatggaacaacttt |
39013219 |
T |
|
| Q |
130 |
ttcaagagatgtctgagctaaggaaaacaataaaaaactgtgcagacacacaaatgcagatgcaattacaacaatcccaaaaccaagaggttcacaaatg |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39013218 |
ttcaagagatttctgagctaaggaaaacaataaaaaactgtgcagacacacaaatgcagatgcaattacaacaatcccaaaaccaagaggttcacaaatg |
39013119 |
T |
|
| Q |
230 |
tatgtgattatttctgcttaacagtagtgtttggtgtatccgataaatgtcgtctcgcttttttcctttgct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39013118 |
tatgtgattatttctgcttaacagtagtgtttggtgtatccgataaatttcgtctcgcttttttcctttgct |
39013047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University