View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_high_89 (Length: 298)
Name: NF1408_high_89
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_89 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 32157920 - 32158198
Alignment:
| Q |
1 |
acttcgctggtaaacaatttagtaagtatccctatcaatagtttatgaatcttgagacgtgctccgattctgatgagcccccaagacctaactcatctac |
100 |
Q |
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| T |
32157920 |
acttcgctggtaaacaatttagtaagtatccctatcaatagtttatgaatcttgagacgtgctccgattctgatgagcccccaagacctaactcatctac |
32158019 |
T |
|
| Q |
101 |
ttatgaagaagnnnnnnngtgcgagagtttttggtaatg-ataattagttgtactatacctcaacaatgggagtaaaccatctaagacgaaaacggggat |
199 |
Q |
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| T |
32158020 |
ttatgaagaagaaaaaaagtgtgagagtttgtggtactggataattagttgtactatacctcaacaatgggagtaaaccatctaagacgaaaacggggat |
32158119 |
T |
|
| Q |
200 |
tagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaatacttgcaaccattcatc |
278 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158120 |
tagtagttcccttgacaggaatcaaatagcaggtaacattgatgttgaactcagctgctaatacttgcaaccattcatc |
32158198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 32168978 - 32169100
Alignment:
| Q |
156 |
tacctcaacaatgggagtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagct |
255 |
Q |
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||||||| ||| ||||||||||||||||||| |||||| ||| ||| |||||| | | |||| |||||||||| || || ||||||||| ||||| |
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| T |
32168978 |
tacctcagcaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttcagagatgttgaattcagca |
32169077 |
T |
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| Q |
256 |
gctaatacttgcaaccattcatc |
278 |
Q |
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|||| || ||||||||||||||| |
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| T |
32169078 |
gctactaattgcaaccattcatc |
32169100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 32165187 - 32165240
Alignment:
| Q |
156 |
tacctcaacaatgggagtaaaccatctaagacgaaaacggggattagtggttcc |
209 |
Q |
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| T |
32165187 |
tacctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttcc |
32165240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 44288314 - 44288280
Alignment:
| Q |
244 |
ttgaactcagctgctaatacttgcaaccattcatc |
278 |
Q |
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| T |
44288314 |
ttgaactcagctgctaatgcttgcaaccattcatc |
44288280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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