View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_high_93 (Length: 292)
Name: NF1408_high_93
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_high_93 |
 | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0032 (2 HSPs) |
| | |
|
| [»] scaffold0634 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0021 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 120107 - 119915
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
120107 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtaccaaactaa |
120008 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgatgatgt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
120007 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgt |
119915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 10890599 - 10890407
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
10890599 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtaccaaactaa |
10890500 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgatgatgt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10890499 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgt |
10890407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 27612089 - 27611923
Alignment:
| Q |
54 |
ctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagat |
153 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27612089 |
ctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagat |
27611990 |
T |
|
| Q |
154 |
taatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
220 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||| ||||||| |
|
|
| T |
27611989 |
taatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtaacgacgaag |
27611923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 22405819 - 22405973
Alignment:
| Q |
44 |
agctgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaac |
143 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
22405819 |
agctgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattaattaacaagtaataaac |
22405918 |
T |
|
| Q |
144 |
taattaagattaatttattatttagacgaacaagtaatagaatggtttcggtaac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
22405919 |
taattaagattaatttattatttagacgaacaaggagtagaatagtttcggtaac |
22405973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 23164407 - 23164558
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || |||| ||||||| |
|
|
| T |
23164407 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattatttaacacgtaccaaactaa |
23164506 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaac |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
23164507 |
ttaagattaatttattatttagacgaaaaagtagtagaatagtttcggtaac |
23164558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 23575664 - 23575815
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || |||| ||||||| |
|
|
| T |
23575664 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattatttaacacgtaccaaactaa |
23575763 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaac |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
23575764 |
ttaagattaatttattatttagacgaaaaagtagtagaatagtttcggtaac |
23575815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 11010096 - 11009990
Alignment:
| Q |
114 |
tccacagggattaattagcaagtactaaactaattaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaat |
213 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||| |
|
|
| T |
11010096 |
tccatagggattaattaacaagtactaaactaattaagattaatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtaac |
11009997 |
T |
|
| Q |
214 |
gacgaag |
220 |
Q |
| |
|
||||||| |
|
|
| T |
11009996 |
gacgaag |
11009990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 11767161 - 11767337
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||| ||||||| || || ||||| |||||||||||| |||| | |||||||| ||||| | ||||||| |
|
|
| T |
11767161 |
tgttgcactaaaaatacacttagagcaagtgtgctctatcacaagagaagtatgaaagattatcgtgtcca-aaaaattaattaacaagttccaaactaa |
11767259 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataa |
225 |
Q |
| |
|
|||| ||| ||||||| |||||| ||| || || | ||||| || ||||||||| | |||||||||| |||| |||| |
|
|
| T |
11767260 |
ttaatatt-atttattgtttagatgaataaatatttgaatgactttggtaactaagtagaaagtaatgatgaagaataa |
11767337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 11544096 - 11543904
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
11544096 |
tgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtatcaaactaa |
11543997 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgatgatgt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11543996 |
ttaagattaatttattatttagacgaacaaataatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaaatgtgaagatgt |
11543904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 21431772 - 21431945
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
21431772 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacaaggattaattaacaagtaccaaactaa |
21431871 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21431872 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
21431945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 16139041 - 16139213
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||| |||||| |
|
|
| T |
16139041 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtattataaaagattatcgtatccgcagagattaattaacaagtaccaaactac |
16139140 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
220 |
Q |
| |
|
|||||||| |||||||||||||| |||||| || | ||||||||||| ||||||| | ||||||| ||||||| |
|
|
| T |
16139141 |
ttaagatt-atttattatttagatgaacaactagttcaatggtttcggcaactaaatagaaagtaacgacgaag |
16139213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 227
Target Start/End: Complemental strand, 10127848 - 10127670
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | | |||||||||| || ||||| |||||||| |||||||||| ||||| |||||| |
|
|
| T |
10127848 |
tgttgcgctaaaaatatacttagagcaagtgtactctattgtaaaagtagtatacaaaattataatatccacaaggattaattaaatagtaccaaactag |
10127749 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaaggataaaa |
227 |
Q |
| |
|
|||||||| ||||||||||||||| || || || | ||||||||| ||||| ||| | ||||||| || ||||||||||| |
|
|
| T |
10127748 |
ttaagatt-atttattatttagacaaataactagttgaatggtttttgtaacgaaatagaaagtaa-gaagaaggataaaa |
10127670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 14276543 - 14276717
Alignment:
| Q |
46 |
ctgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaacta |
145 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
14276543 |
ctgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccccagggattaattaacaagtaccaaacta |
14276642 |
T |
|
| Q |
146 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14276643 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
14276717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 37470195 - 37470367
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
37470195 |
tgttgcgctaaaaacacacttagagcaagtgtactcaatcgcataagtagtataaaagattatcgtatccacatggattaattaacaagtactaaactaa |
37470294 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
220 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| |||| ||||||||| |||||| |||||||||| |
|
|
| T |
37470295 |
ttaagattactttattatttagacgaacaagtagtagaat-gttttggtaactaagtaaaaagaaatgacgaag |
37470367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 11623752 - 11623631
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
11623752 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcacagaagtagtataaaagattatcgtatccacagagattaattaataagtactaaactaa |
11623653 |
T |
|
| Q |
147 |
ttaaga-ttaatttattattta |
167 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
11623652 |
ttaagatttaatttattattta |
11623631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 45279872 - 45279778
Alignment:
| Q |
104 |
gattatcgtatccacagggattaattagcaagtactaaactaattaagattaatttattatttagacgaacaagtaatagaatggtttcggtaac |
198 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
45279872 |
gattatcgtatccacagggattaattaacaagtactaaactaattaagattaatttattatttagacgaacaagtagtagaatagtttcggtaac |
45279778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 213
Target Start/End: Complemental strand, 1686354 - 1686199
Alignment:
| Q |
57 |
aaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagattaa |
156 |
Q |
| |
|
|||||| || |||||||||| |||| |||| ||||||||| |||||||||||| ||| |||| ||| |||||| |||||| ||||||||||| ||| |
|
|
| T |
1686354 |
aaaacacacatagagcaagtatactatatcacagaagtagaataaaagattattttattcacaaggaataattaacaagtatacaactaattaaggtta- |
1686256 |
T |
|
| Q |
157 |
tttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaat |
213 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||| ||||||| |||||||||| |
|
|
| T |
1686255 |
tttattatttagacgaacaagtagttgaatggcttcggaaactaaataaaaagtaat |
1686199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 45279911 - 45279878
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtac |
80 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
45279911 |
tgttgcgctaaaaacacacttagagcaagtgtac |
45279878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 7576 - 7750
Alignment:
| Q |
46 |
ctgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaacta |
145 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
7576 |
ctgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacaaggattaattaaaaagtaccaaacta |
7675 |
T |
|
| Q |
146 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7676 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
7750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 31962763 - 31962590
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31962763 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
31962664 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||| ||||||| |
|
|
| T |
31962663 |
ttaagattaatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtaacgacgaag |
31962590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 10889318 - 10889462
Alignment:
| Q |
69 |
gagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagattaatttattatttag |
168 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||| |||| ||| ||||| |||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10889318 |
gagcaagggtactctatcgtagaagtag-----aagattatcatatcaacaaggattcattaacaagtactaaactaattaagatta-tttattatttag |
10889411 |
T |
|
| Q |
169 |
acgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaa |
219 |
Q |
| |
|
||| ||||||| ||||||| |||| |||||| || |||||||||||||||| |
|
|
| T |
10889412 |
acggacaagtattagaatgatttcagtaactgaataaaaagtaatgacgaa |
10889462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 23616794 - 23616749
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaa |
92 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23616794 |
tgttgtgctaaaaacacacttagagcaagtgtactctatcgcagaa |
23616749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 23616730 - 23616662
Alignment:
| Q |
152 |
attaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
220 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| |||||| |||| || ||||||||| ||||||| |
|
|
| T |
23616730 |
attaatttattatttagacgaccaagtagtagaatagtttcgataaccaagtaaaaagtaacgacgaag |
23616662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 22799086 - 22799175
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagt |
136 |
Q |
| |
|
||||| ||||||||| ||||||| |||||| || ||||||| |||| |||||||||||||| | ||||||| | ||||||||||||| |
|
|
| T |
22799086 |
tgttgtgctaaaaactcacttagatcaagtgccctttatcgcataagtggtataaaagattattgcatccacaaaggttaattagcaagt |
22799175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 3727 - 3901
Alignment:
| Q |
46 |
ctgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaacta |
145 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
3727 |
ctgttgcgctaaaaacacacttatagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaatttacaagtaccaaacta |
3826 |
T |
|
| Q |
146 |
attaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
3827 |
attaagattaatttattatttagacgaacaagtaatagaatggttttagtaaccaaagaaaaagtaatgacgaag |
3901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 22380 - 22228
Alignment:
| Q |
53 |
gctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaaga |
152 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22380 |
gctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtactaaactaattaaga |
22281 |
T |
|
| Q |
153 |
ttaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaa |
206 |
Q |
| |
|
|| |||||||||||||||||||||||| || |||||||||| |||||||||| |
|
|
| T |
22280 |
tt-atttattatttagacgaacaagtagatgagtggtttcggtcactaaagaaa |
22228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 29275 - 29178
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaact |
144 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29275 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattaacaagtactaaact |
29178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0634 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0634
Description:
Target: scaffold0634; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 4114 - 3963
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || |||| ||||||| |
|
|
| T |
4114 |
tgttgcgctaaaaacacacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacatggattatttaacacgtaccaaactaa |
4015 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaac |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
4014 |
ttaagattaatttattatttagacgaaaaagtagtagaatagtttcggtaac |
3963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 70 - 206
Target Start/End: Complemental strand, 17342863 - 17342728
Alignment:
| Q |
70 |
agcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagattaatttattatttaga |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17342863 |
agcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacaaggattaattaacaagtactaaactaattaagatt-atttattatttaga |
17342765 |
T |
|
| Q |
170 |
cgaacaagtaatagaatggtttcggtaactaaagaaa |
206 |
Q |
| |
|
|||||||||| || |||||| |||||||||||||| |
|
|
| T |
17342764 |
cgaacaagtagatgagtggttttggtaactaaagaaa |
17342728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 13812689 - 13812817
Alignment:
| Q |
92 |
agtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaattaagattaatttattatttagacgaacaagtaatagaatggttt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
13812689 |
agtagtataaaagattatcgtatccacagaggttaattaacaagtactaaactaattaagattaatttattatttagacgaacaagtagtagaatagttt |
13812788 |
T |
|
| Q |
192 |
cggtaactaaagaaaaagtaatgacgaag |
220 |
Q |
| |
|
||||||| || ||||||||| ||||||| |
|
|
| T |
13812789 |
cggtaaccaagtaaaaagtaacgacgaag |
13812817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 26116109 - 26115950
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
26116109 |
tgttgcgctaaaaacacacctaaagcaagtgtactctatcgcataagtagtataaaagattattgtatcaaca--------------agtactaaactaa |
26116024 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgacgaag |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||| ||||||||| |
|
|
| T |
26116023 |
ttaagattaatttattatttagacgaacaagtagtagaatagtttcggtaaccaagtaaaaagtgatgacgaag |
26115950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 7705912 - 7705869
Alignment:
| Q |
65 |
cttagagcaagtgtactctatcgcagaagtagtataaaagatta |
108 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7705912 |
cttagagcaagtgtactctattgcagaagtagtataaaagatta |
7705869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 47 - 229
Target Start/End: Original strand, 48179972 - 48180155
Alignment:
| Q |
47 |
tgttgcgctaaaaacatacttagagcaagtgtactctatcgcagaagtagtataaaagattatcgtatccacagggattaattagcaagtactaaactaa |
146 |
Q |
| |
|
|||||| | ||||| | ||||| || |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| ||| || ||||||| |
|
|
| T |
48179972 |
tgttgcccaaaaaagaaacttacagtaagtgtactctatcataaaagtagtataaaagattatcgtatccacattgattaattaacaaatatcaaactaa |
48180071 |
T |
|
| Q |
147 |
ttaagattaatttattatttagacgaacaagtaatagaatggtttcggtaactaaagaaaaagtaatgac---gaaggataaaaat |
229 |
Q |
| |
|
|||||||| |||||||||| | ||||||||| | ||||||| ||||| ||||| || |||||||||||| ||||||||||||| |
|
|
| T |
48180072 |
ttaagatt-atttattattcaaacgaacaagcattagaatgatttcgataact-gagtaaaagtaatgacaaagaaggataaaaat |
48180155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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