View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_1 (Length: 761)
Name: NF1408_low_1
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 581; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 101 - 732
Target Start/End: Complemental strand, 34994747 - 34994115
Alignment:
| Q |
101 |
atcttcggtgtagccgtataaacccaacatataagtgaaacatacctcgagcatctgcaataagttttgttgcattcagtgtttcagaccactcaatgtg |
200 |
Q |
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| T |
34994747 |
atcttcggtgtagctgtataaacccaacatataagtgaaacgtacctcgagcatctgcaataagttttgttgcattcagtgtttcagaccactcaatgtg |
34994648 |
T |
|
| Q |
201 |
ctggacaatggaagcaagccagcgtggtgcaccaaaagccaaaccagaggtaacaaatgtcttaaaaagaccattcaattgactatggtctgctactaca |
300 |
Q |
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| T |
34994647 |
ctggacaatggaagcaagccagcgtggcgcaccaaaagccaaaccagaggtaacaaatgtcttaaaaagaccattcaattgactatggtctgctactaca |
34994548 |
T |
|
| Q |
301 |
tgctccacccatataacctaatgtaattataaaacatcaaaccaaatataatatgtgaaattatcaatatggtttgcttataaagaaaattaaaaggagt |
400 |
Q |
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| T |
34994547 |
tgctccacccatataacctaatgtaattataaaacatcaaaccaaatataatatgtgaaattatcaatatggtttgcttataaagaaaattaaagggagt |
34994448 |
T |
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| Q |
401 |
atatgtatgtaaagaaccttggagtttccattgggcattcctcctataatcaaacagcctgaaggtcttttatgaaaattgtttgagaaagaaggtaaaa |
500 |
Q |
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| T |
34994447 |
atatgtatgtaaagaaccttggagtttccattgggcat---tcctataatcaaacagcctgaaggtcttttatgaaaattgtttgagaaagaaggtaaaa |
34994351 |
T |
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| Q |
501 |
tgtcctccaaagatacatcaacaacagcccatatgttatgagtaaattgtttgctatatcttgcaaacacacactcccgagttggtataaaaggactagg |
600 |
Q |
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| T |
34994350 |
tgtcctccaaagatacatcaacaacagcccatatgttatgagtaaattgtttgctatatcttgcaaacacacactcccgagttggtataaaaggactagg |
34994251 |
T |
|
| Q |
601 |
caaataaatttctgcactcatctgcaaataaaattatatatata----aagtgaaatgagaatagatacaaagaccaatttgagaaaacatacaaaggac |
696 |
Q |
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| T |
34994250 |
caaataaaattctgcactcatctgcaaataaaattatatatatatatcaagtgaaatgagaatagatacaaagaccaatttgagaaaacatagaaaggac |
34994151 |
T |
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| Q |
697 |
acgacaaataaacctagcaagaattttcacactaaa |
732 |
Q |
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| T |
34994150 |
acgacaaataaacctagcaagaattttcacactaaa |
34994115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 138 - 630
Target Start/End: Complemental strand, 34986335 - 34985857
Alignment:
| Q |
138 |
aaacatacctcgagcatctgcaataagttttgttgcattcagtgtttcagaccactcaatgtgctggacaatggaagcaagccagcgtggtgcaccaaaa |
237 |
Q |
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| T |
34986335 |
aaacatacctccagcatctgcaataagttttggagccttcagtgtttcagaccactcaatgtatcggacaatggaagttagccaacgtgttgcaccaaaa |
34986236 |
T |
|
| Q |
238 |
gccaaaccagaggtaacaaatgtcttaaaaagaccattcaattgactatggtctgctactacatgctccacccatataacctaatgtaattataaaacat |
337 |
Q |
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| T |
34986235 |
gccaaagctgaggtaactaatggcctaaaaagatcactcaatttactatagtctgcttccacgtgctccaaccatataacctaaggtaatta--aaacat |
34986138 |
T |
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| Q |
338 |
caaacc--aaatataatatgtgaaattatcaatatggtttgcttataaagaaaattaaaaggagtatatgtatgtaaagaaccttggagtttccattggg |
435 |
Q |
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| T |
34986137 |
caaaactgaactattatac---------tccattt--tttgtttataatcaaaactaaaagcagtatatgtatgtatcaaaccttggagtttccatcggg |
34986049 |
T |
|
| Q |
436 |
cattcctcctataatcaaacagcctgaaggtcttttatgaaaattgtttgagaaagaaggtaaaatgtcctccaaagatacatcaacaacagcccatatg |
535 |
Q |
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| T |
34986048 |
cattccttc---aatcaaacagccagaaggtcttttatgaaaattgttagaaggagattgtaaaatgtcctccaaagatacatcaacaacagcccatatg |
34985952 |
T |
|
| Q |
536 |
ttatgagtaaattgtttgctatatcttgcaaacacacactcccgagttggtataaaaggactaggcaaataaatttctgcactcatctgcaaata |
630 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |||||| || |||| || ||||||||||||||||||||| |
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| T |
34985951 |
ttatgagtgaattgtttgctatatcttgcaaaaacacacttccgagttggtataacaggacttggtaaatgaaattctgcactcatctgcaaata |
34985857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 666 - 723
Target Start/End: Complemental strand, 34985760 - 34985703
Alignment:
| Q |
666 |
aaagaccaatttgagaaaacatacaaaggacacgacaaataaacctagcaagaatttt |
723 |
Q |
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| T |
34985760 |
aaagaccaatttgacaatacatacaaaggacaagacaagttaaactagcaagaatttt |
34985703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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