View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_10 (Length: 554)
Name: NF1408_low_10
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 29672493 - 29671972
Alignment:
| Q |
1 |
cccaagaaaaagccctgggtcggcccgtttttccaaaagccataggtgaacttcatggtcattcaggcatagcacgtttagcactttactatgctcgtag |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672493 |
cccaagaaaaagccctgggccggcccgtttttccaaaagccataggtgaacttcatggtcattcaggcatagcacgtttagcactttactatgctcgtag |
29672394 |
T |
|
| Q |
101 |
cctctgtgggcttgttgatgggacccacggaatgggtgttgctaacgctggtttggtttatttcaataaccgtttgttagctatgtctgaagatgatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672393 |
cctctgtgggcttgttgatgggacccacggaatgggtgttgctaacgctggtttggtttatttcaataaccgtttgttagctatgtctgaagatgatatt |
29672294 |
T |
|
| Q |
201 |
ccttatcatattcgtgtcacacctaacggtgatttaaccaccgtttgccgttatgatttcgataatcaactcaaatctacaatgatagctcatccgaagg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29672293 |
ccttatcatattcgtgtcacacctaacggtgatttaaccaccgtttgccgttatgatttcgataatcaactcaaatctacaatgatagctcatcccaagg |
29672194 |
T |
|
| Q |
301 |
ttgatccagttgataagaatatgtatgctttgagctatgacgtagttcaaaagccttatttgaaatactttcgttttgatgcgtccggagttaagtctcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672193 |
ttgatccagttgataagaatatgtatgctttgagctatgacgtagttcaaaagccttatttgaaatactttcgttttgatgcgtccggagttaagtctcc |
29672094 |
T |
|
| Q |
401 |
ggacgttgagattccgttggagcagcctactatgatgcatgacttcgcgatcactgagaatttcgttgttgtgcctgatcaacaagttgtgtttaaattg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672093 |
ggacgttgagattccgttggagcagcctactatgatgcatgacttcgcgatcactgagaatttcgttgttgtgcctgatcaacaagttgtgtttaaattg |
29671994 |
T |
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| Q |
501 |
ggtgaaatgatccgtggtgggt |
522 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
29671993 |
ggtgaaatgatccgtggtgggt |
29671972 |
T |
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