View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_102 (Length: 325)
Name: NF1408_low_102
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_102 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 7222309 - 7222094
Alignment:
| Q |
29 |
aaaatgtaagagacaaattaggtgaaatccttgagatacctaaagtgtagagaatttaatttaagaatggaaagagatttccagagattcttccaagttg |
128 |
Q |
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| T |
7222309 |
aaaatgttagagacaaatttggtgaaatccttgcgatacctaaagtgtagagaatttaatttaagaatggaaagagatttccagagattctttcaagttg |
7222210 |
T |
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| Q |
129 |
tggagagtatacaagtttgtactgcttcttttgagtccaaaaaggagagtatgtgaagaagaacagactcgggtaaatcgctgagtctgtcttgtttatg |
228 |
Q |
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| T |
7222209 |
tggagagtatacaagtttgtactgcttcttttgggtccaaaaaggagagtatgtgaagaagaacagactcgggtaaatcgctgagtctgtcttgtttatg |
7222110 |
T |
|
| Q |
229 |
gttatgccttcatctc |
244 |
Q |
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||||||||||| |||| |
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| T |
7222109 |
gttatgccttcttctc |
7222094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 7058794 - 7058931
Alignment:
| Q |
84 |
ttaatttaagaatggaaagagatttccagagattcttccaagttgtggagagtatacaagtttgtactgcttcttttgagtccaaaaaggagagtatgtg |
183 |
Q |
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|||||||||| |||| |||| ||||||||||||||||||| | | ||||||| ||||||||||| || || ||||| | ||||||||||||||| ||||| |
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| T |
7058794 |
ttaatttaaggatgggaagatatttccagagattcttccatgatttggagagaatacaagtttggaccgcctctttagggtccaaaaaggagagaatgtg |
7058893 |
T |
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| Q |
184 |
aagaagaacagactcgggtaaatcgctgagtctgtctt |
221 |
Q |
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| T |
7058894 |
aagtagaatacactcgggtaagacactgagcctgtctt |
7058931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 13459683 - 13459605
Alignment:
| Q |
107 |
ttccagagattcttccaagttgtggagagtatacaagtttgtactgcttcttttgagtccaaaaaggagagtatgtgaa |
185 |
Q |
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| T |
13459683 |
ttccagagattcctccatcttgtggacagtatgcaagtttgaactgctattttagaccgcaaaaaggagagtatgtgaa |
13459605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 6889232 - 6889119
Alignment:
| Q |
100 |
aagagatttccagagattcttccaagttgtggagagtatacaagtttgtactgcttcttttgagtccaaaaaggagagtatgtgaagaagaacagactcg |
199 |
Q |
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|||| ||||||||||||| ||||| || |||| || || |||||||| || || ||| | | ||||||||| |||||||||||||||| |||| | ||| |
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| T |
6889232 |
aagatatttccagagattgttccatcttttggatagaatgcaagtttgaacagcgtctatggtgtccaaaaaagagagtatgtgaagaataacacaatcg |
6889133 |
T |
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| Q |
200 |
ggtaaatcgctgag |
213 |
Q |
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| T |
6889132 |
ggtaagtcactgag |
6889119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 32413703 - 32413588
Alignment:
| Q |
107 |
ttccagagattcttccaagttgtggagagtatacaagtttgtactgcttcttttgagtccaaaaaggagagtatgtgaagaagaacagactcgggtaaat |
206 |
Q |
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||||||||||||||||| ||||||| | || |||||||| || || | ||| | || |||| |||||||||||||||| | |||| | || | ||||| |
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| T |
32413703 |
ttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaat |
32413604 |
T |
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| Q |
207 |
cgctgagtctgtcttg |
222 |
Q |
| |
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| T |
32413603 |
cactgagtctgtcttg |
32413588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 6844151 - 6844102
Alignment:
| Q |
164 |
tccaaaaaggagagtatgtgaagaagaacagactcgggtaaatcgctgag |
213 |
Q |
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|||||||| |||||||||||||||| |||| | ||||||||||| ||||| |
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| T |
6844151 |
tccaaaaaagagagtatgtgaagaataacacaatcgggtaaatcactgag |
6844102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 38142204 - 38142259
Alignment:
| Q |
166 |
caaaaaggagagtatgtgaagaagaacagactcgggtaaatcgctgagtctgtctt |
221 |
Q |
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| T |
38142204 |
caaaaaggagagtatgtgaaggataacacagtcaggtaagtcgctgagtctgtctt |
38142259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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