View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_106 (Length: 320)
Name: NF1408_low_106
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_106 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 30 - 309
Target Start/End: Original strand, 31233791 - 31234070
Alignment:
| Q |
30 |
ataatgacattcttctttattgcttatttcaaaggaacacactatcattgatcaagcacatactattgatccaaacataacagtacaaaatctcactatt |
129 |
Q |
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| T |
31233791 |
ataatgacattcttctttattgcttattgcaaaggaacacactatcattgatcaagcacatactattgatccaaacataacagtacaaaatctcactatt |
31233890 |
T |
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| Q |
130 |
tctaaagttttgattataaaatgacagagttaggacattttaaatgtcaaattcacgtacacaaattagaaatcatttttacataaagtagaaatctata |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
31233891 |
tctaaagttttgattataaaatgacagagttaggacattttaaatgtcaaattcacgtacacaaattagaaatcattttcacatagagtagaaatctata |
31233990 |
T |
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| Q |
230 |
ttgaagatgaacctatatttaaccacctttaccaagaataaaaaatgaataagtatttaagcacctttaccaagagtatt |
309 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31233991 |
ttgaagatgaacctataattaaccacctttaccaagaataaaaaatgaataaatatttaagcacctttaccaagagtatt |
31234070 |
T |
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