View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_108 (Length: 318)
Name: NF1408_low_108
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_108 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 11707687 - 11707530
Alignment:
| Q |
39 |
ctttgacaaaaatacatttaaattgttaatctttgaaacaaaaatatctttgaaacacgcaacctacgtttaagaatatcccgcttctccttccaccgcc |
138 |
Q |
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| T |
11707687 |
ctttgacaaaaatacatttaaattgttaatctttgaaacaaaaatatctttgaaacacgcaacctacgtttaagaatatcccgcttctccttccaccgcc |
11707588 |
T |
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| Q |
139 |
actatattcgtcccctccgtcgccacgtccgcctccctctatctcaccaccgtaacca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11707587 |
actatattcgtcccctccgtcgccacgtccgcctccctctatctcaccaccgtaacca |
11707530 |
T |
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