View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_111 (Length: 311)
Name: NF1408_low_111
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_111 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 73 - 311
Target Start/End: Original strand, 6357643 - 6357885
Alignment:
| Q |
73 |
aatatgtttgtcccaggttccttaatgcactaccattaacatttagtgtcaaagtattgttgtcaacctgtttccaacaaacttggagttaccaaatgct |
172 |
Q |
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| T |
6357643 |
aatatgtttgtcccaggttccttaatgcactaccattaacatttagtgtcaaagtattgttgtcaacatgtttccaacaaacttggagttaccaaatgct |
6357742 |
T |
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| Q |
173 |
cgtcgtgagatatagagctgggaaaagatcgaatcaattgtagaatcagtcaca----tagtttcttcaaaaacaaatttattcattgtacaccacaagt |
268 |
Q |
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| T |
6357743 |
cgttgtgagatatagagctgggaaaagatcgaatcgattgtagaatcagtcacaatcttagtttcttcaaaaacaaatttattcattgtacaccacaagt |
6357842 |
T |
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| Q |
269 |
tccacataatcaaagtagctatgtttccttcttcgacaaccat |
311 |
Q |
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| T |
6357843 |
tccacataatcaaagtagctatgtttccttcttcgacaaccat |
6357885 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 7588651 - 7588715
Alignment:
| Q |
233 |
cttcaaaaacaaatttattcattgtacaccacaagttccacataatcaaagtagctatgtttcct |
297 |
Q |
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| T |
7588651 |
cttcaaagacaaatttattccttatacaccaaatattccacatgatcaaaggagctatgattcct |
7588715 |
T |
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