View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_115 (Length: 310)

Name: NF1408_low_115
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_115
NF1408_low_115
[»] chr1 (4 HSPs)
chr1 (190-280)||(33887828-33887918)
chr1 (190-280)||(33956332-33956422)
chr1 (123-152)||(33887800-33887829)
chr1 (123-152)||(33956421-33956450)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 33887828 - 33887918
Alignment:
Q  190 aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttgatcttcaattgtagtattatct 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  33887828 aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttggtcttcaattgtagtataatct 33887918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 33956422 - 33956332
Alignment:
Q  190 aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttgatcttcaattgtagtattatct 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  33956422 aattggagcgataaaccaagtgtcattcaaaaaatgagttcacttgtcgttcaagctgcaataaggttggtcttcaattgtagtataatct 33956332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 33887800 - 33887829
Alignment:
Q  123 tcaactcaactcataaaaacaattctacaa 152  Q
    ||||||||||||||||||||||||||||||    
T  33887800 tcaactcaactcataaaaacaattctacaa 33887829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 33956450 - 33956421
Alignment:
Q  123 tcaactcaactcataaaaacaattctacaa 152  Q
    ||||||||||||||||||||||||||||||    
T  33956450 tcaactcaactcataaaaacaattctacaa 33956421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University