View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_120 (Length: 305)
Name: NF1408_low_120
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_120 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 40566524 - 40566388
Alignment:
| Q |
88 |
tcatcaagcctgttgcataaagccacacatcctgtggtgtagttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctg |
187 |
Q |
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| T |
40566524 |
tcatcaagcctgttgcataaagccacacatcctgtggtgtagttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctg |
40566425 |
T |
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| Q |
188 |
tcaacttgtttcgagttggagagatgtaaaaatgtgt |
224 |
Q |
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| T |
40566424 |
tcaacttgtttcgagttggcgagatgtaaaaatgtgt |
40566388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 40595899 - 40595769
Alignment:
| Q |
93 |
aagcctgttgcataaagccacacatcctgtggtgtagttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaac |
192 |
Q |
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| T |
40595899 |
aagcctgttgcacaaggccacacatgcagtggtgtatgtgtttcctttagaatcaattgcttcgagtagtcccattgtgtcacatccaactgctatcaac |
40595800 |
T |
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| Q |
193 |
ttgtttcgagttggagagatgtaaaaatgtg |
223 |
Q |
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| T |
40595799 |
ttgttttgagttggcgagacgtgaaaatgtg |
40595769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 40589493 - 40589364
Alignment:
| Q |
95 |
gcctgttgcataaagccacacatcctgtggtgtagttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaactt |
194 |
Q |
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| T |
40589493 |
gcctgttgcaccaagccaaacatccagaggtgtagttgtttccttcagaatcaattactccgagtattccagatgtatcacagccaactgctaccaactt |
40589394 |
T |
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| Q |
195 |
gtttcgagttggagagatgtaaaaatgtgt |
224 |
Q |
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| T |
40589393 |
gtttcgagtgggagagaggtgaaaatgtgt |
40589364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 40577637 - 40577578
Alignment:
| Q |
88 |
tcatcaagcctgttgcataaagccacacatcctgtggtgtagttgtttcccccagaatca |
147 |
Q |
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| T |
40577637 |
tcatcaagcctgttgcagaaagccacacatcctgtggcgtaggttttttcctcagaatca |
40577578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 40571131 - 40571075
Alignment:
| Q |
168 |
cgtgtcacagccaactgctgtcaacttgtttcgagttggagagatgtaaaaatgtgt |
224 |
Q |
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| T |
40571131 |
cgtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgt |
40571075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 2017158 - 2017244
Alignment:
| Q |
96 |
cctgttgcataaagccacacatcctgtggtgtagttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaac |
182 |
Q |
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| T |
2017158 |
cctgttgcacaaagccaaacatcccgtggtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaac |
2017244 |
T |
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