View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_low_123 (Length: 303)
Name: NF1408_low_123
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_123 |
 | |
|
| [»] scaffold0055 (8 HSPs) |
| | |
|
| [»] scaffold0052 (7 HSPs) |
| | |
|
Alignment Details
Target: scaffold0055 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 16078 - 16271
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16078 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
16177 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16178 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
16271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 39080 - 38887
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39080 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
38981 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38980 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
38887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 46929 - 46736
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46929 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
46830 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46829 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
46736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 63951 - 63758
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63951 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
63852 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63851 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
63758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 48328 - 48135
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48328 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
48229 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48228 |
agggacgggggaagcccgtctgataacgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
48135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 59654 - 59461
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
59654 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttattcgatccta |
59555 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
59554 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
59461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 27601 - 27794
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27601 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
27700 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27701 |
aggaacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcggggtaaaattcctgaaccgggatgtggtggctgacgg |
27794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 103 - 247
Target Start/End: Complemental strand, 78298 - 78151
Alignment:
| Q |
103 |
aggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatcctaaggg-acgggggaagcccgtctgatag-cgctctaagcgcgtacaccga |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
78298 |
aggggaaaggttccatgtgaacggcacgggcacatgggttagtcgatcctaagggcccgggggaagcccgtctgatagcccctctaagcgcgtacaccga |
78199 |
T |
|
| Q |
201 |
aa-gggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
78198 |
aaggggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
78151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 22852 - 22659
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22852 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
22753 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22752 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
22659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 33123 - 33316
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33123 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
33222 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
33316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 37977 - 38170
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37977 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
38076 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38077 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
38170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 14038 - 13845
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14038 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttattcgatccta |
13939 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13938 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
13845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 59926 - 59733
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
59926 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
59827 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
59826 |
agggacgggggaagcccgtctgataacgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
59733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 45247 - 45054
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45247 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
45148 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45147 |
agggatgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggcggctgacgg |
45054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 68464 - 68271
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
68464 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
68365 |
T |
|
| Q |
154 |
agggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcctgaaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
68364 |
aggaacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcggggtaaaattcctgaaccgggatgtggtggctgacgg |
68271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 44137524 - 44137403
Alignment:
| Q |
126 |
gcacttgcacatgggttagtcgatcctaagggacgggggaagcccgtctgatagcgctctaagcgcgtacaccgaaagggaatcgggttaaaattcct-g |
224 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
44137524 |
gcacttgcacatgggttagttgatcctaagggacgggg-aagcccgtctgatagtgctctaagcgcgtacaccaaaagggaatgaagttaaaattcctaa |
44137426 |
T |
|
| Q |
225 |
aaccgggatgtggtggctgacgg |
247 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
44137425 |
aaccgggacgtggtggctgacgg |
44137403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 11095072 - 11094971
Alignment:
| Q |
54 |
atcttggtggtagtagcaaatattcaaatgagaactttgaaggccgaagaggggaaaggttccatgtgaacggcacttgcacatgggttagtcgatccta |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| || ||| ||| ||| || ||||||||||||||||| |
|
|
| T |
11095072 |
atcttggtggtagtagcaaatattcaaatgagaactttgaagactgaagtggggaaaggttccacgtcaacagcagttggacgtgggttagtcgatccta |
11094973 |
T |
|
| Q |
154 |
ag |
155 |
Q |
| |
|
|| |
|
|
| T |
11094972 |
ag |
11094971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University