View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_124 (Length: 303)

Name: NF1408_low_124
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_124
NF1408_low_124
[»] chr6 (8 HSPs)
chr6 (85-231)||(21883396-21883543)
chr6 (83-226)||(14607588-14607732)
chr6 (92-231)||(18817058-18817198)
chr6 (92-231)||(24901827-24901967)
chr6 (130-226)||(2919866-2919963)
chr6 (135-231)||(6689385-6689482)
chr6 (85-223)||(30705427-30705565)
chr6 (145-231)||(25085251-25085338)
[»] chr7 (19 HSPs)
chr7 (85-231)||(38300195-38300341)
chr7 (108-231)||(33941457-33941581)
chr7 (85-231)||(24658561-24658708)
chr7 (85-223)||(2945222-2945362)
chr7 (92-226)||(1691793-1691930)
chr7 (83-231)||(46090011-46090159)
chr7 (92-231)||(43265761-43265901)
chr7 (93-226)||(25233095-25233229)
chr7 (96-223)||(39785648-39785776)
chr7 (109-231)||(27080575-27080698)
chr7 (109-231)||(27197603-27197726)
chr7 (92-174)||(30074505-30074588)
chr7 (132-231)||(8256734-8256834)
chr7 (169-241)||(8062569-8062641)
chr7 (172-231)||(1247851-1247910)
chr7 (145-226)||(25617858-25617940)
chr7 (92-226)||(26787423-26787559)
chr7 (169-229)||(38838337-38838397)
chr7 (132-226)||(33598005-33598100)
[»] chr3 (16 HSPs)
chr3 (85-231)||(38573115-38573262)
chr3 (112-231)||(23778423-23778543)
chr3 (85-231)||(24310015-24310162)
chr3 (85-231)||(36477862-36478009)
chr3 (107-231)||(7856660-7856784)
chr3 (92-231)||(26903296-26903436)
chr3 (92-231)||(36617604-36617744)
chr3 (133-231)||(25032076-25032177)
chr3 (107-231)||(26285641-26285766)
chr3 (92-231)||(36475613-36475754)
chr3 (107-162)||(52308781-52308836)
chr3 (113-226)||(35502351-35502465)
chr3 (128-226)||(30136769-30136865)
chr3 (128-226)||(30142898-30142994)
chr3 (128-226)||(30146320-30146416)
chr3 (171-231)||(41897717-41897777)
[»] chr5 (10 HSPs)
chr5 (92-231)||(43144709-43144849)
chr5 (92-229)||(36745085-36745223)
chr5 (92-231)||(17076439-17076579)
chr5 (130-231)||(36633810-36633912)
chr5 (108-231)||(25819240-25819363)
chr5 (132-222)||(39509268-39509359)
chr5 (92-196)||(30078095-30078202)
chr5 (85-152)||(34750977-34751044)
chr5 (113-222)||(5569121-5569237)
chr5 (107-152)||(5070012-5070057)
[»] chr8 (14 HSPs)
chr8 (93-231)||(2148528-2148667)
chr8 (84-231)||(24556724-24556872)
chr8 (92-231)||(45486022-45486162)
chr8 (83-226)||(44873422-44873567)
chr8 (92-231)||(29866311-29866451)
chr8 (93-196)||(34696879-34696983)
chr8 (110-226)||(32161217-32161335)
chr8 (83-231)||(7681183-7681332)
chr8 (109-231)||(6802580-6802703)
chr8 (107-164)||(11993599-11993656)
chr8 (92-152)||(10381567-10381627)
chr8 (145-231)||(41303324-41303411)
chr8 (92-222)||(43421754-43421884)
chr8 (145-226)||(3662180-3662263)
[»] chr4 (10 HSPs)
chr4 (108-231)||(2815733-2815859)
chr4 (85-231)||(36248011-36248158)
chr4 (92-231)||(4377427-4377568)
chr4 (92-226)||(2158776-2158911)
chr4 (92-231)||(33518221-33518361)
chr4 (130-231)||(50723122-50723224)
chr4 (85-226)||(1112138-1112279)
chr4 (92-196)||(25023087-25023192)
chr4 (145-226)||(24153718-24153800)
chr4 (177-226)||(35255142-35255191)
[»] chr1 (10 HSPs)
chr1 (85-231)||(9539433-9539580)
chr1 (85-222)||(8065119-8065257)
chr1 (107-231)||(9477786-9477911)
chr1 (92-231)||(1016832-1016972)
chr1 (92-231)||(25031091-25031231)
chr1 (92-231)||(10780989-10781128)
chr1 (132-231)||(6226868-6226968)
chr1 (92-226)||(34912456-34912591)
chr1 (118-231)||(27464078-27464192)
chr1 (92-196)||(23353534-23353638)
[»] chr2 (9 HSPs)
chr2 (85-235)||(3356909-3357059)
chr2 (92-231)||(4075588-4075728)
chr2 (85-231)||(32033113-32033260)
chr2 (111-226)||(18703483-18703599)
chr2 (113-221)||(7700509-7700618)
chr2 (131-231)||(11562191-11562291)
chr2 (109-192)||(34878498-34878582)
chr2 (113-222)||(38417898-38418008)
chr2 (130-226)||(16639003-16639099)
[»] scaffold0684 (1 HSPs)
scaffold0684 (95-152)||(4254-4311)
[»] scaffold0163 (1 HSPs)
scaffold0163 (95-152)||(3807-3864)
[»] scaffold0002 (1 HSPs)
scaffold0002 (83-152)||(461228-461296)
[»] scaffold0535 (1 HSPs)
scaffold0535 (166-226)||(9895-9955)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 21883396 - 21883543
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttc 183  Q
    |||||| |||||||||||||||||||||||| ||||||| || | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21883396 atcatctattttgttacttaatttactcttctcaacttttatagttgaaaaaacacgttcaacacttgcagttgctaccggcaagagcaaagccaacttc 21883495  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    ||||||||||||||| |||||||||||||  |||||||||||| ||||    
T  21883496 aaaagtttataaaccatagcaaatgtgttgtacttatttgtttccaca 21883543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 14607732 - 14607588
Alignment:
Q  83 taatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaact 181  Q
    |||||||| |||| ||||| ||  |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  14607732 taatcatctatttggttacataggttactcttcacaactttcataggtgaaaaaacacgtttaacacttgcagttgctaccgtcaagagcaaagtcaact 14607633  T
Q  182 tcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    ||||||||||||||||| || |  ||||||| |||||||||||||    
T  14607632 tcaaaagtttataaaccataacttatgtgttgcacttatttgttt 14607588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 18817058 - 18817198
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
T  18817058 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 18817157  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    || |||||  ||||||||| || ||||||||||||| ||||    
T  18817158 taaaaaccaaagcaaatgtcttgcacttatttgtttccaca 18817198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 24901827 - 24901967
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
T  24901827 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 24901926  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    || |||||  ||||||||| || ||||||||||||| ||||    
T  24901927 taaaaaccaaagcaaatgtcttgcacttatttgtttccaca 24901967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 2919963 - 2919866
Alignment:
Q  130 tgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| || |||||||||| || ||||||||||    
T  2919963 tgaaaaaacacgttcaacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagttaataaaccataacaaatgtgttgcatttatttgttt 2919866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 6689385 - 6689482
Alignment:
Q  135 aaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| | |||||||||||||  |||||||||||||||||    
T  6689385 aaacacgttcaacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgtacttatttgttttcaca 6689482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 30705427 - 30705565
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 183  Q
    |||| |||||||||||| || || | |||||||||  ||||| ||||||||| ||  ||||| ||||||| ||||||||| |||||||||||  ||||||    
T  30705427 atcaccgattttgttacatagttgattcttcacaatcttcatagctgaaaaa-catattcaaaacttgcaattgctaccgacaagagcaaagttaacttc 30705525  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttg 223  Q
    |||  |||||||||| |||||||| | |||||| ||||||    
T  30705526 aaatatttataaaccatagcaaatattttacacctatttg 30705565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 25085338 - 25085251
Alignment:
Q  145 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||| |||| |||||||||| ||| |||||||| | ||||||||| |||| || | ||| ||||||||| ||||||||||||||||||    
T  25085338 aacatttgcggttgctaccgacaaaagcaaagcaaccttcaaaagcttatgaatcatagtaaatgtgttgcacttatttgttttcaca 25085251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 85 - 231
Target Start/End: Complemental strand, 38300341 - 38300195
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 183  Q
    |||||| ||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||    
T  38300341 atcatccattttgttacttaatttactctttacaactttcatagatgaaaaaa-acgttcaacacttgcaattgctaccggcaagagcaaagtcaacttc 38300243  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  38300242 aaaagtttataaaccatagcaaatgtgttgcacttatttgtttccaca 38300195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 33941581 - 33941457
Alignment:
Q  108 tactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaa 206  Q
    ||||||||||||||||||| | ||||||||||||||||||  ||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||    
T  33941581 tactcttcacaactttcatagatgaaaaaacacgttcaacgattgcagttgctaccggcaagagcaaatccaacttcaaaagtttataatccatagcaaa 33941482  T
Q  207 tgtgttacacttatttgttttcaca 231  Q
    |||||| ||||||||||||| ||||    
T  33941481 tgtgttgcacttatttgtttccaca 33941457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 24658561 - 24658708
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 183  Q
    |||||| |||||||||| ||  |||||||| ||||  ||||| ||||||||||||||||||||||||||||||| || || |||||||||| ||||||||    
T  24658561 atcatccattttgttacataggttactctttacaatcttcatagctgaaaaaacacgttcaacacttgcagttgttatcggcaagagcaaaaccaacttc 24658660  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    ||||||||||||| | ||||||||||||| ||||||||||||| ||||    
T  24658661 aaaagtttataaatcatagcaaatgtgttgcacttatttgtttccaca 24658708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 2945362 - 2945222
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaa-cacgttcaacacttgcagttgctaccg-caagagcaaagccaactt 182  Q
    |||||| |||||||||  ||  ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||    
T  2945362 atcatccattttgttatgtaggttactcttcacaactttcatatctgaaaaaaacacgttcaacacttgcagttgctaccgacaagagcaaagtcaactt 2945263  T
Q  183 caaaagtttataaaccctagcaaatgtgttacacttatttg 223  Q
    |||||||||||||| | ||||||||||||| || |||||||    
T  2945262 caaaagtttataaatcatagcaaatgtgttgcatttatttg 2945222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 1691793 - 1691930
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaaca--cttgcagttgctaccg-caagagcaaagccaacttcaaaag 188  Q
    |||||||||| ||  ||||||||||||||||| || |||||||||||||||||||||  |||||||||||||  | || ||||||| |||||||||||||    
T  1691793 attttgttacatatgttactcttcacaacttttatagctgaaaaaacacgttcaacatacttgcagttgctattggcatgagcaaaaccaacttcaaaag 1691892  T
Q  189 tttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  1691893 tttataaaccatagcaaatgtgttgcacttatttgttt 1691930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 46090159 - 46090011
Alignment:
Q  83 taatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaact 181  Q
    |||||||| | |||||||| || |  |||||||||||||||||| | |||||||||||||||||||||| | |||||||| | ||||||||||||| |||    
T  46090159 taatcatccactttgttacatagtagactcttcacaactttcatagttgaaaaaacacgttcaacactt-cggttgctactggcaagagcaaagccgact 46090061  T
Q  182 tcaaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    || |||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  46090060 tccaaagcttataaaccatagcaaatgtgttgcacttatttgttttcaca 46090011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 43265901 - 43265761
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
T  43265901 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 43265802  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    || |||||  ||||| ||| || ||||||||||||| ||||    
T  43265801 taaaaaccaaagcaagtgtcttgcacttatttgtttccaca 43265761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 25233095 - 25233229
Alignment:
Q  93 ttttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagttt 191  Q
    ||||||||| || || ||| |||||||||||  | ||||||||||||||||||||||||||| |||||| || ||||||||||||||| |||||||| ||    
T  25233095 ttttgttacatagttaactgttcacaacttttgtagctgaaaaaacacgttcaacacttgcacttgctacccacaagagcaaagccaatttcaaaagctt 25233194  T
Q  192 ataaaccctagcaaatgtgttacacttatttgttt 226  Q
    ||||| | || |||||||||| |||||||||||||    
T  25233195 ataaatcataacaaatgtgttgcacttatttgttt 25233229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 39785648 - 39785776
Alignment:
Q  96 tgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttata 194  Q
    |||||| || || |||||||||||| || || ||||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||  |||||    
T  39785648 tgttacatagttgactcttcacaaccttgatagctgaaaaaacacattcaacacttgcagttgctaccaacaagagcaaaaccaacttcaaaaacttata 39785747  T
Q  195 aaccctagcaaatgtgttacacttatttg 223  Q
     |||  ||||||||||||||| |||||||    
T  39785748 caccaaagcaaatgtgttacaattatttg 39785776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 27080575 - 27080698
Alignment:
Q  109 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaat 207  Q
    ||||||||  |||||||| ||| |||||| | |||||||||||||||||||||||| ||| ||  |||||||||||||||  ||||||| | ||||||||    
T  27080575 actcttcatgactttcatagcttaaaaaatatgttcaacacttgcagttgctaccgacaaaagagaagccaacttcaaaaacttataaatcatagcaaat 27080674  T
Q  208 gtgttacacttatttgttttcaca 231  Q
    ||||| ||||||||||||| ||||    
T  27080675 gtgttgcacttatttgtttccaca 27080698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 27197726 - 27197603
Alignment:
Q  109 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaat 207  Q
    ||||||||  |||||||| ||| |||||| | |||||||||||||||||||||||| ||| ||  |||||||||||||||  ||||||| | ||||||||    
T  27197726 actcttcatgactttcatagcttaaaaaatatgttcaacacttgcagttgctaccgacaaaagagaagccaacttcaaaaacttataaatcatagcaaat 27197627  T
Q  208 gtgttacacttatttgttttcaca 231  Q
    ||||| ||||||||||||| ||||    
T  27197626 gtgttgcacttatttgtttccaca 27197603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 30074588 - 30074505
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaa 174  Q
    |||||||||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||    
T  30074588 attttgttacataggttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcagttgctaccgacaagagcaaa 30074505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 8256734 - 8256834
Alignment:
Q  132 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttcac 230  Q
    |||||||| |||||||||||||||||| ||||| ||||||||||  |||||||||||| ||||||||  ||||||||||| | ||||||||| ||| |||    
T  8256734 aaaaaacatgttcaacacttgcagttgttaccggcaagagcaaaatcaacttcaaaagcttataaacaatagcaaatgtgctgcacttatttatttccac 8256833  T
Q  231 a 231  Q
    |    
T  8256834 a 8256834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 8062569 - 8062641
Alignment:
Q  169 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttcacaggttctgctc 241  Q
    ||||||||||| |||||||  ||||||| | ||||||||||||| ||||||||||||| |||| ||| |||||    
T  8062569 agcaaagccaatttcaaaaacttataaatcatagcaaatgtgttgcacttatttgtttccacaagttttgctc 8062641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 1247910 - 1247851
Alignment:
Q  172 aaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||| |||||||||||| ||||||| | ||||||||||||| ||||||||||||| ||||    
T  1247910 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccaca 1247851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 25617858 - 25617940
Alignment:
Q  145 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    |||||||||| ||||||||| |||   ||||  |||||||||||| ||||||| | |||||||||||||||| ||||||||||    
T  25617858 aacacttgcacttgctaccgacaaatacaaaatcaacttcaaaagcttataaatcatagcaaatgtgttacatttatttgttt 25617940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 26787423 - 26787559
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgc-aagagcaaagccaacttcaaaa-gt 189  Q
    |||||||||| ||||| | | |||||||||||  | | ||| |||||| ||| |||||||||| ||| |||||  || ||||||  ||||||||||| ||    
T  26787423 attttgttacataattgattgttcacaacttttgtagatgacaaaacatgtttaacacttgcaattgataccgataaaagcaaaatcaacttcaaaaagt 26787522  T
Q  190 ttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    ||||||||| || ||||| |||| |||||| ||||||    
T  26787523 ttataaaccataacaaatatgttgcacttacttgttt 26787559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 38838337 - 38838397
Alignment:
Q  169 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttca 229  Q
    |||||||| ||||||||||| ||||||| | | ||||||||||| | ||||||||||||||    
T  38838337 agcaaagctaacttcaaaagcttataaatcattgcaaatgtgttgcgcttatttgttttca 38838397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 33598005 - 33598100
Alignment:
Q  132 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    ||||||||  ||||||  ||||| ||||||||  ||||||||||||||| || ||||| ||||||| | || |||||||||| |||||| ||||||    
T  33598005 aaaaaacatattcaactattgcaattgctacccacaagagcaaagccaaatttaaaagcttataaatcataacaaatgtgttgcacttaattgttt 33598100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 38573115 - 38573262
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttc 183  Q
    |||||| |||||||||||||||||| |||||||||||||| | |||||||||||| | ||||||||||||||||||| | ||||||||||||||||||||    
T  38573115 atcatcaattttgttacttaatttattcttcacaactttcgtagctgaaaaaacatgatcaacacttgcagttgctatcggcaagagcaaagccaacttc 38573214  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    ||||||||||||||  ||||||||||||| ||||||||||||| ||||    
T  38573215 aaaagtttataaacaatagcaaatgtgttgcacttatttgtttccaca 38573262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 23778423 - 23778543
Alignment:
Q  112 cttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtg 210  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  23778423 cttcacaactttcatagctaaaaaaacacgttcaacacttgcagttgctaccagcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtg 23778522  T
Q  211 ttacacttatttgttttcaca 231  Q
    || || |||||||||| ||||    
T  23778523 ttgcatttatttgtttccaca 23778543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 24310015 - 24310162
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttc 183  Q
    |||||| ||||| |||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||  ||||||||||| |||||||    
T  24310015 atcatccattttattacatatgttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcagttgctaccaacaagagcaaagtcaacttc 24310114  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    ||||||||||||||| ||||||||||||  ||||||||||||| ||||    
T  24310115 aaaagtttataaaccatagcaaatgtgtcgcacttatttgtttccaca 24310162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 85 - 231
Target Start/End: Complemental strand, 36478009 - 36477862
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 183  Q
    |||||| |||||||||| ||  ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||    
T  36478009 atcatccattttgttacataggttactcttcacaactttcatatctgaaaaaacacgttcaacacttgccgttgctaccgacaaaagcaaagccaacttc 36477910  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||||||||||   | ||||||||| ||| ||||||||| ||||||||    
T  36477909 aaaagtttatagggcatagcaaatgcgttgcacttatttattttcaca 36477862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 7856660 - 7856784
Alignment:
Q  107 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaa 205  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||    
T  7856660 ttactcttcacaaatttcatagctgaaaaa-cacgttcaacacttgcagttgctaccggcaaaagcaaagccaacttcaaaagtttataaaccataggaa 7856758  T
Q  206 atgtgttacacttatttgttttcaca 231  Q
    | ||||| ||||||||||||| ||||    
T  7856759 acgtgttgcacttatttgtttccaca 7856784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 26903296 - 26903436
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
T  26903296 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 26903395  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    || |||||  ||||||||| || ||||||||||||| ||||    
T  26903396 taaaaaccaaagcaaatgtcttgcacttatttgtttccaca 26903436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 36617744 - 36617604
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
T  36617744 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 36617645  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    || |||||  ||||||||| || ||||||||||||| ||||    
T  36617644 taaaaaccaaagcaaatgtcttgcacttatttgtttccaca 36617604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 25032177 - 25032076
Alignment:
Q  133 aaaaacacgttcaacacttgcagttgctaccgc---aagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttca 229  Q
    |||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||| ||||||| ||  ||||||||| || |||||||||| ||    
T  25032177 aaaaacacgttcaacacttgcagttgctaccgcggcaagagcaaaaccaacttcaaaagttaataaaccataataaatgtgttgcatttatttgtttcca 25032078  T
Q  230 ca 231  Q
    ||    
T  25032077 ca 25032076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 231
Target Start/End: Complemental strand, 26285766 - 26285641
Alignment:
Q  107 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgcaa-gagcaaagccaacttcaaaagtttataaaccctagcaa 205  Q
    |||||||||||||||||||   || ||||||||  ||||||||||| |||||||| || || |||||||| |||||||||||| ||||||||| ||  ||    
T  26285766 ttactcttcacaactttcaaatctaaaaaaacattttcaacacttgtagttgctaacggaaagagcaaagtcaacttcaaaagcttataaaccataataa 26285667  T
Q  206 atgtgttacacttatttgttttcaca 231  Q
    || |||| ||||||||||||| ||||    
T  26285666 atttgttgcacttatttgtttccaca 26285641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 36475613 - 36475754
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaa-acacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagt 189  Q
    |||||||||| ||  |||||||| | ||||||||| ||||||||| |||| ||||||  ||||||||||||||| |||||| ||||||||||| ||| |     
T  36475613 attttgttacataggttactctttagaactttcatagctgaaaaacacacattcaaccgttgcagttgctaccgacaagagaaaagccaacttaaaaggc 36475712  T
Q  190 ttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    || |||| | || |||||||||| ||||| ||||||| ||||    
T  36475713 ttctaaatcataacaaatgtgttgcacttgtttgtttccaca 36475754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 52308836 - 52308781
Alignment:
Q  107 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctac 162  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  52308836 ttactcttcacaacattcatagctgaaaaaatacgttcaacacttgcagttgctac 52308781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 35502465 - 35502351
Alignment:
Q  113 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgt 211  Q
    ||||||||||| || |||||||| |||  ||||||||||||| ||||||||  | ||||||||  |||||||||||| ||||||| | || |||||| ||    
T  35502465 ttcacaacttttatagctgaaaatacatattcaacacttgcaattgctacccacgagagcaaaatcaacttcaaaagcttataaatcataacaaatgggt 35502366  T
Q  212 tacacttatttgttt 226  Q
    | |||||||||||||    
T  35502365 tgcacttatttgttt 35502351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 30136769 - 30136865
Alignment:
Q  128 gctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    ||||||||||||||||||||||||||| |||||| || ||| |||||  | ||||| ||||| ||||||||| || ||||| |||| |||||||||||||    
T  30136769 gctgaaaaaacacgttcaacacttgcaattgctacccacaatagcaa--ctaactt-aaaagcttataaaccataacaaatatgttgcacttatttgttt 30136865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 30142898 - 30142994
Alignment:
Q  128 gctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    ||||||||||||||||||||||||||| |||||| || ||| |||||  | ||||| ||||| ||||||||| || ||||| |||| |||||||||||||    
T  30142898 gctgaaaaaacacgttcaacacttgcaattgctacccacaatagcaa--ctaactt-aaaagcttataaaccataacaaatatgttgcacttatttgttt 30142994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 30146320 - 30146416
Alignment:
Q  128 gctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    ||||||||||||||||||||||||||| |||||| || ||| |||||  | ||||| ||||| ||||||||| || ||||| |||| |||||||||||||    
T  30146320 gctgaaaaaacacgttcaacacttgcaattgctacccacaatagcaa--ctaactt-aaaagcttataaaccataacaaatatgttgcacttatttgttt 30146416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 41897717 - 41897777
Alignment:
Q  171 caaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||||| ||||||||||| |||||||   ||||||||||||| ||||||||||||||||||    
T  41897717 caaagctaacttcaaaagcttataaataatagcaaatgtgttgcacttatttgttttcaca 41897777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 43144709 - 43144849
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||  |||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  43144709 attttgttacataggttactctttacacctttcatagctgaaaaaatacgttcaacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagtt 43144808  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||||||| |||||||||||||||| |||||||||| ||||    
T  43144809 tataaaccatagcaaatgtgttacatttatttgtttccaca 43144849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 36745085 - 36745223
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  36745085 attttgttacatatgttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcagttgttaccgacaagagcaaagtcaacttcaaaagtt 36745184  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttca 229  Q
    |||||||| || |||||||||| ||||||| ||||||||    
T  36745185 tataaaccatatcaaatgtgttgcacttatatgttttca 36745223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 17076579 - 17076439
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||| | |||||||| ||  ||||| ||| ||||||||||||||||||||||| || | |||| |||||| ||||||||| ||||||| |    
T  17076579 attttgttacgtaaatgactcttcagaatcttcatagctaaaaaaacacgttcaacacttgcaattacaaccgacaagagtaaagccaacatcaaaagct 17076480  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    ||||||||  ||||||||| || ||||||||||||| ||||    
T  17076479 tataaaccaaagcaaatgtcttgcacttatttgtttccaca 17076439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 36633912 - 36633810
Alignment:
Q  130 tgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttc 228  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||| |  ||||||||||| ||||||| ||||||||||||| || |||||||||| |    
T  36633912 tgaaaaaacatgttcaacacttgcagttgctaccagcaaaagcaaagtctgcttcaaaagttaataaaccatagcaaatgtgttgcatttatttgtttcc 36633813  T
Q  229 aca 231  Q
    |||    
T  36633812 aca 36633810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 25819240 - 25819363
Alignment:
Q  108 tactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaaa 206  Q
    |||| ||||||||||| || | |||||||||| |||| |||||||||||||||| | ||||||||||| |||| || |||||  |||||| | |||||||    
T  25819240 tactattcacaactttaatagttgaaaaaacatgttcgacacttgcagttgctatcagcaagagcaaaaccaatttaaaaag-ctataaatcatagcaaa 25819338  T
Q  207 tgtgttacacttatttgttttcaca 231  Q
    ||| || || |||||||||| ||||    
T  25819339 tgtattgcagttatttgtttccaca 25819363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 39509268 - 39509359
Alignment:
Q  132 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttattt 222  Q
    |||||||| |||||||||||| | ||| ||||  |||| ||||||||||||||||||||||||||| | || ||||| |||| |||||||||    
T  39509268 aaaaaacaagttcaacacttgtaattgttacccacaagggcaaagccaacttcaaaagtttataaatcgtaacaaatatgttgcacttattt 39509359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 30078202 - 30078095
Alignment:
Q  92 attttgttacttaatttactcttcacaac---tttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaa 187  Q
    |||||||||| ||||| ||||||||||||   |||||  | |||||||||| |||||||||||| |||||||||| |||||||||||  |||||| ||||    
T  30078202 attttgttacataatt-actcttcacaacaattttcaatgttgaaaaaacatgttcaacacttgaagttgctaccggcaagagcaaaatcaactttaaaa 30078104  T
Q  188 gtttataaa 196  Q
    | |||||||    
T  30078103 gcttataaa 30078095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 34751044 - 34750977
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 152  Q
    |||||| |||||||||| |   |||||||||||||||||||| |||| ||| ||||||||||||||||    
T  34751044 atcatccattttgttacatgggttactcttcacaactttcatagctgtaaagacacgttcaacacttg 34750977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 5569121 - 5569237
Alignment:
Q  113 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgcta-------ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaa 205  Q
    |||||||||||  | |||||||| |||| ||||||||||||| ||||||       || ||||||||||| |||||||||||| | ||||| | || |||    
T  5569121 ttcacaacttttgtagctgaaaatacacattcaacacttgcaattgctattgctacccacaagagcaaagtcaacttcaaaagctaataaatcataacaa 5569220  T
Q  206 atgtgttacacttattt 222  Q
    ||||||| |||||||||    
T  5569221 atgtgttgcacttattt 5569237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 5070012 - 5070057
Alignment:
Q  107 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 152  Q
    ||||||||  |||||||||| |||||||||||||||||||||||||    
T  5070012 ttactcttatcaactttcatagctgaaaaaacacgttcaacacttg 5070057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 2148528 - 2148667
Alignment:
Q  93 ttttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagttt 191  Q
    ||||||||| ||||| |||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||    
T  2148528 ttttgttacataattgactcttaacaaccttcatagctgaaaaaacacgttcaacatttgcagttgctaccgacaagagcaaagccagcttcaaaagctt 2148627  T
Q  192 ataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    ||||| | ||| ||||||||| ||||||||||||||||||    
T  2148628 ataaatcatagaaaatgtgttgcacttatttgttttcaca 2148667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 84 - 231
Target Start/End: Complemental strand, 24556872 - 24556724
Alignment:
Q  84 aatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgc-aagagcaaagccaactt 182  Q
    ||||||| |||||||||| || ||  ||||||||||||||||| | ||||||||||| ||||| |||||||||||||||||  |||||||||||||||||    
T  24556872 aatcatccattttgttacatagttgtctcttcacaactttcatagttgaaaaaacacattcaatacttgcagttgctaccggtaagagcaaagccaactt 24556773  T
Q  183 caaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||||  ||||||||| || |||||||||| ||||||||||||||||||    
T  24556772 caaaatcttataaaccataacaaatgtgttgcacttatttgttttcaca 24556724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 45486162 - 45486022
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
T  45486162 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 45486063  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    || |||||  ||||||||| || ||||||||||||| ||||    
T  45486062 taaaaaccaaagcaaatgtcttgcacttatttgtttccaca 45486022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 44873422 - 44873567
Alignment:
Q  83 taatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaa-cacgttcaacacttgcagttgctaccg-caagagcaaagccaac 180  Q
    |||||| | |||||||||| ||  ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  44873422 taatcacccattttgttacataggttactcttcacaactttcatatctgaaaaaaacacgttcaacacttgcagttgctaccggcaaaagcaaagccaac 44873521  T
Q  181 ttcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    |||||||||||||||| | || ||| |||||| ||| |||||||||    
T  44873522 ttcaaaagtttataaatcataacaattgtgttgcacatatttgttt 44873567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 29866311 - 29866451
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||  |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||| ||| | ||| ||||||||||    
T  29866311 attttgttacataggttactcttcacaactttcatagctgaaaaaatacgttaaacacttgcagttgctaccggcaagaacaaggtcaagttcaaaagtt 29866410  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    || ||| | ||||||||||||| |  |||||||||| ||||    
T  29866411 tagaaatcatagcaaatgtgttgcgtttatttgtttccaca 29866451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 34696983 - 34696879
Alignment:
Q  93 ttttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagttt 191  Q
    ||||||||| ||  ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||||||||    
T  34696983 ttttgttacataggttactcttcacaattttcatagctgaaaaaacacgttcaacacttgcaattgctaccggcaagagcaaagtcaatttcaaaagttt 34696884  T
Q  192 ataaa 196  Q
    |||||    
T  34696883 ataaa 34696879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 110 - 226
Target Start/End: Complemental strand, 32161335 - 32161217
Alignment:
Q  110 ctcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttat-aaaccctagcaaat 207  Q
    |||||||||| |||||| | |||||||||||||||||||||| ||||||||||| ||||||| || |||||||||||||| |||| ||||| || |||||    
T  32161335 ctcttcacaattttcatagttgaaaaaacacgttcaacacttacagttgctaccggcaagagtaatgccaacttcaaaagcttataaaaccatatcaaat 32161236  T
Q  208 gtgttacacttatttgttt 226  Q
    |||  ||||||||||||||    
T  32161235 gtgcaacacttatttgttt 32161217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 7681332 - 7681183
Alignment:
Q  83 taatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaact 181  Q
    |||||||| |||||||||| || || ||||||||||||||| || || ||||||||| ||||||||||||||  |||||||  ||||||||||  ||| |    
T  7681332 taatcatctattttgttacatagttgactcttcacaacttttatagcagaaaaaacatgttcaacacttgcatatgctaccaacaagagcaaaatcaatt 7681233  T
Q  182 tcaaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||||||||||||||   ||  ||||||||| |||||| |||||||||||    
T  7681232 tcaaaagtttataaataataataaatgtgttgcacttacttgttttcaca 7681183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 6802703 - 6802580
Alignment:
Q  109 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaat 207  Q
    |||||||||||||||||| | ||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||||||| ||||||| | |  |||||    
T  6802703 actcttcacaactttcatagttgaaaaaacacgtgcaatacttgcagttgctaccggcgagagcaaaaccaacttcaaaagcttataaagcatttcaaat 6802604  T
Q  208 gtgttacacttatttgttttcaca 231  Q
    ||||| || ||| |||||| ||||    
T  6802603 gtgttgcatttaattgtttccaca 6802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 11993656 - 11993599
Alignment:
Q  107 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg 164  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  11993656 ttactcttcacaacattcatagctgaaaaaacacgttcaacacttgcagttgctaccg 11993599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 10381567 - 10381627
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 152  Q
    ||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  10381567 attttattacataagttactcttcacaactttcatagctgaaaaaacacgttcaacacttg 10381627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 41303411 - 41303324
Alignment:
Q  145 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||||||||| |||||| || ||| |||||| ||||||||||||| ||| ||| | ||||||||||||| ||||||||||||||||||    
T  41303411 aacacttgcatttgctatcgacaaaagcaaaaccaacttcaaaagcttacaaatcatagcaaatgtgttgcacttatttgttttcaca 41303324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 222
Target Start/End: Original strand, 43421754 - 43421884
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||||| ||| |||||||||||||| | | |||||||| |||| ||||||||| || |||||  ||| |||||||||||||| |||||||    
T  43421754 attttgttacataattgacttttcacaactttcatagtt-aaaaaacatgttcgacacttgcaatttctacccacaaaagcaaagccaactttaaaagtt 43421852  T
Q  191 tataaaccctagcaaatgtgttacacttattt 222  Q
    |||||||  ||  |||| |||| |||||||||    
T  43421853 tataaactataataaatatgttgcacttattt 43421884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 3662180 - 3662263
Alignment:
Q  145 aacacttgcagttgctaccgc-aagagcaaagccaacttcaaaag-tttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    |||||||||| |||||||||  || |||||||||||||||||||  |||||||| | ||||||||||| | |||||||||||||    
T  3662180 aacacttgcatttgctaccgttaaaagcaaagccaacttcaaaaactttataaatcatagcaaatgtgctgcacttatttgttt 3662263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 2815733 - 2815859
Alignment:
Q  108 tactcttcacaactttcatggctgaaaaaacac--gttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagca 204  Q
    |||||||||||||||| || |||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||    
T  2815733 tactcttcacaactttaatagctgaaaaaacacacgttcaacacttgcagttgctaccggcaagagcaaagccaacttgaaaagtttataaaccatagca 2815832  T
Q  205 aatgtgttacacttatttgttttcaca 231  Q
    |||||||| ||||||||||||| ||||    
T  2815833 aatgtgttgcacttatttgtttccaca 2815859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 36248011 - 36248158
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttc 183  Q
    |||||| |||||||||  ||  |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36248011 atcatccattttgttaaataggttactcttcacacctttcatatctgaaaaaacacgttcaacacttgcagttgctaccggcaagagcaaagccaacttc 36248110  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    ||||||||||||| | || |||| ||||| ||||||||||||| ||||    
T  36248111 aaaagtttataaatcataacaaaagtgttgcacttatttgtttccaca 36248158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 4377427 - 4377568
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  4377427 attttgttacataggttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcaattgctaccggcaagagcaaagtcaacttcaaaagtt 4377526  T
Q  191 tat-aaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    ||| ||| | ||||||||||||| ||||||||||||| ||||    
T  4377527 tataaaatcatagcaaatgtgttgcacttatttgtttccaca 4377568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 2158776 - 2158911
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||  |||||||||||||||||||| | ||||||||||| |||||||||| || ||||||||| |||||||||| ||||||||||||| |    
T  2158776 attttgttacataggttactcttcacaactttcatagttgaaaaaacacattcaacacttacacttgctaccggcaagagcaaaaccaacttcaaaagct 2158875  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttt 226  Q
    || ||||| ||||||||||||| |||||||||||||    
T  2158876 tacaaaccatagcaaatgtgttgcacttatttgttt 2158911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 33518221 - 33518361
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||  ||||||||||||||||||||  | |||||||||||| |||||||| ||||||| ||| ||||||| ||||||||||| |||||||    
T  33518221 attttgttacataggttactcttcacaactttcatatccgaaaaaacacgtacaacacttacagttgccaccggcaagagtaaagccaactttaaaagtt 33518320  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    ||||||||    |||||||||| ||||||||||||| ||||    
T  33518321 tataaaccacgacaaatgtgttgcacttatttgtttccaca 33518361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 50723224 - 50723122
Alignment:
Q  130 tgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttc 228  Q
    ||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||  |||||||||||| || ||||||||||||    
T  50723224 tgaaaaaacacattcaacacttgcagttgctaccggcaagagtaaagtcaacttcaaaagttaataaaccacagcaaatgtgttgcatttatttgttttc 50723125  T
Q  229 aca 231  Q
    |||    
T  50723124 aca 50723122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 1112138 - 1112279
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 183  Q
    |||||| |||||||||| || ||  ||||||||||||||||| | ||||||  |||||||||| ||||| |||||| | | ||| |||||||||||||||    
T  1112138 atcatccattttgttacatagttggctcttcacaactttcatagttgaaaag-cacgttcaacgcttgccgttgctgctgacaaaagcaaagccaacttc 1112236  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    ||||  ||||||||| |  |||||||||| |||||| ||||||    
T  1112237 aaaaacttataaaccatcacaaatgtgttgcacttaattgttt 1112279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 25023192 - 25023087
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctac-cgcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| || || ||| ||||||||||||   || ||||||||| |||||||||||| ||||| ||  | |||||||||| |||||||||||||||    
T  25023192 attttgttacatagttgacttttcacaactttcgcagcagaaaaaacatgttcaacacttgtagttgttattcacaagagcaaaaccaacttcaaaagtt 25023093  T
Q  191 tataaa 196  Q
    ||||||    
T  25023092 tataaa 25023087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 24153718 - 24153800
Alignment:
Q  145 aacacttgcagttgctaccgc-aagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    |||| ||| |||||||||||| |||||||||| |||||||| | | ||||||||  ||| ||||||||| |||||||||||||    
T  24153718 aacatttgtagttgctaccgccaagagcaaagtcaacttcacatgcttataaactatagtaaatgtgttgcacttatttgttt 24153800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 35255142 - 35255191
Alignment:
Q  177 caacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    |||||||||||  ||||||| | ||||||||||||||||||| |||||||    
T  35255142 caacttcaaaaacttataaatcatagcaaatgtgttacacttgtttgttt 35255191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 85 - 231
Target Start/End: Complemental strand, 9539580 - 9539433
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttc 183  Q
    |||||| |||||||||| ||  ||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||    
T  9539580 atcatccattttgttacataggttactcttcacaattttcatagctgaaaaaacacgtttaacacttgcagttgctatcggcaagagcaaaaccaacttc 9539481  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||||||||||||||  | |||||||||| ||||||||||||| ||||    
T  9539480 aaaagtttataaaccaaaacaaatgtgttgcacttatttgtttccaca 9539433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 8065119 - 8065257
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttc 183  Q
    |||||| ||||| |||| ||  ||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  8065119 atcatccattttattacataggttactcttcacaagtttcatagctgaaaaaacacgtttaacaattgcagttgctaccagcaagagcaaagccaacttc 8065218  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttattt 222  Q
    ||||||||||||||| || |||||||||| || ||||||    
T  8065219 aaaagtttataaaccataacaaatgtgttgcatttattt 8065257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 9477786 - 9477911
Alignment:
Q  107 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctac-cgcaagagcaaagccaacttcaaaagtttataaaccctagcaa 205  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||| |||||||  ||| ||| |||||||||||||||| |||||||||| ||||||    
T  9477786 ttactcttcacaactttcatagctgaaaaaacacgtttaacacttgcaattgctactagcatgagaaaagccaacttcaaaactttataaaccatagcaa 9477885  T
Q  206 atgtgttacacttatttgttttcaca 231  Q
    ||||||| ||||||||||||| ||||    
T  9477886 atgtgttgcacttatttgtttccaca 9477911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 1016972 - 1016832
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
T  1016972 attttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 1016873  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    || |||||  ||||||||| || ||||||||||||| ||||    
T  1016872 taaaaaccaaagcaaatgtcttgcacttatttgtttccaca 1016832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 25031091 - 25031231
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||  ||| ||||||||||||||||   ||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||    
T  25031091 attttgttacataggttaatcttcacaactttcatatttgaaaaaacacgttcaacaattgcagttgttaccggcaagagcaaagtcaacttcaaaagtt 25031190  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||||||| ||||||||||||| || |||||||||| ||||    
T  25031191 tataaaccatagcaaatgtgttgcatttatttgtttccaca 25031231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 10781128 - 10780989
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||  ||||||||||  ||||||||  ||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||    
T  10781128 attttgttacataggttactcttcaacactttcatatctgaaaaaacacgtt-aacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagtt 10781030  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    |||||||  ||| ||||||||| ||||||||||||| ||||    
T  10781029 tataaactatagtaaatgtgttgcacttatttgtttccaca 10780989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 6226868 - 6226968
Alignment:
Q  132 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttcac 230  Q
    |||| ||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| |||    
T  6226868 aaaatacacggtcaacacttgcagttgctatcggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccac 6226967  T
Q  231 a 231  Q
    |    
T  6226968 a 6226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 34912456 - 34912591
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagtt 190  Q
    |||||||||| ||  |||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||| | |||||  |||||||||||||||||| |    
T  34912456 attttgttacataggttactcttaacaactttcatagctgaaaaaacacattcaacacttgcagttactatcggcaaggacaaagccaacttcaaaagct 34912555  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttt 226  Q
    |||||||  |||  |||||||| |||||||||||||    
T  34912556 tataaactatagtgaatgtgttgcacttatttgttt 34912591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 27464192 - 27464078
Alignment:
Q  118 aactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacac 216  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||||| || ||| |||||||||||||||||| ||||||| | || ||||||| || |||    
T  27464192 aactttcatagctgaaaaaacacgttcaacaattgcagctgctaccggctagaacaaagccaacttcaaaagcttataaatcataacaaatgtattgcac 27464093  T
Q  217 ttatttgttttcaca 231  Q
    |||||||||| ||||    
T  27464092 ttatttgtttccaca 27464078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 23353534 - 23353638
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgc-aagagcaaagccaacttcaaaagtt 190  Q
    ||||||||||  | || ||| |||||||||||||| ||| ||||||||| ||||||| ||||| |||||||||  ||||||||| ||||||||||||  |    
T  23353534 attttgttacgaagttgactattcacaactttcatagct-aaaaaacactttcaacagttgcaattgctaccggtaagagcaaaaccaacttcaaaaact 23353632  T
Q  191 tataaa 196  Q
    ||||||    
T  23353633 tataaa 23353638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 3357059 - 3356909
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 183  Q
    |||||| |||||||||| || |||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||  ||| ||||||| |||||||    
T  3357059 atcatccattttgttacatagtttactcttcacaacttttatagctgaaaaa-cacattcaacacttgcagttgctaccaacaatagcaaagtcaacttc 3356961  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttgttttcacaggtt 235  Q
    ||||||||||||| | ||||||||||||| || |||||||||| ||||||||    
T  3356960 aaaagtttataaatcatagcaaatgtgttgcatttatttgtttccacaggtt 3356909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 4075588 - 4075728
Alignment:
Q  92 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtt 190  Q
    ||||| |||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
T  4075588 attttattacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaagagcaaagccaacttcaaaagct 4075687  T
Q  191 tataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    || |||||  ||||||||| || ||||||||||||| ||||    
T  4075688 taaaaaccaaagcaaatgtcttgcacttatttgtttccaca 4075728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 32033113 - 32033260
Alignment:
Q  85 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 183  Q
    |||||| |||||||||| ||  |||||||||||||||||||| ||| ||||||| | || ||||||||||| || ||||| |||||||||| ||||||||    
T  32033113 atcatccattttgttacataggttactcttcacaactttcatagctaaaaaaacgcctttaacacttgcagctgttaccggcaagagcaaaaccaacttc 32033212  T
Q  184 aaaagtttataaaccctagcaaatgtgttacacttatttgttttcaca 231  Q
    ||||||||||||| | ||||||||||||| || |||||||||| ||||    
T  32033213 aaaagtttataaatcatagcaaatgtgttgcatttatttgtttccaca 32033260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 18703599 - 18703483
Alignment:
Q  111 tcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgt 209  Q
    |||||||||||||||| | |||||||| ||||||||||| || ||||||||  | |||||||||||||||||||||||| ||||||||| || ||||| |    
T  18703599 tcttcacaactttcatagttgaaaaaatacgttcaacacatgtagttgctataggcaagagcaaagccaacttcaaaagcttataaaccatatcaaatat 18703500  T
Q  210 gttacacttatttgttt 226  Q
    ||| |||||||||||||    
T  18703499 gtttcacttatttgttt 18703483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 7700509 - 7700618
Alignment:
Q  113 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgt 211  Q
    |||| ||||||||| ||||||||||||||||||||| |||||  ||||||| |||||||||||| |||| ||||||| ||||||||| || |||||||||    
T  7700509 ttcataactttcatagctgaaaaaacacgttcaacatttgcaaatgctaccagcaagagcaaagtcaacgtcaaaagcttataaaccataacaaatgtgt 7700608  T
Q  212 tacacttatt 221  Q
    |  |||||||    
T  7700609 tgaacttatt 7700618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 11562191 - 11562291
Alignment:
Q  131 gaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttttca 229  Q
    |||||||||| ||||| ||||||| ||||||||| |||||| |||||||||||||| |||| ||||||  |||||||| |||| || |||||||||| ||    
T  11562191 gaaaaaacacattcaa-acttgcaattgctaccggcaagagtaaagccaacttcaatagttaataaactatagcaaatatgttgcatttatttgtttcca 11562289  T
Q  230 ca 231  Q
    ||    
T  11562290 ca 11562291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 34878582 - 34878498
Alignment:
Q  109 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagttta 192  Q
    ||||||||||||||| ||   ||||||| || ||||||||||||| ||| |||||| |||  | |||||||||||||||||||||    
T  34878582 actcttcacaacttttataattgaaaaagcatgttcaacacttgccgttactaccgacaaaggtaaagccaacttcaaaagttta 34878498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 38417898 - 38418008
Alignment:
Q  113 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgt 211  Q
    |||||||||||  | || ||||| ||||  |||||||||||| |||||||  ||||||||| |  |||||||||||| ||||||| | || ||||| |||    
T  38417898 ttcacaacttttgtagcagaaaatacacaatcaacacttgcaattgctacatgcaagagcacaatcaacttcaaaagcttataaatcataacaaatatgt 38417997  T
Q  212 tacacttattt 222  Q
    | |||||||||    
T  38417998 tgcacttattt 38418008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 16639099 - 16639003
Alignment:
Q  130 tgaaaaaacacgttcaacacttgcagttgctac-cgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    |||| |||||||| |||||||||||||||  || || |||||||||  ||||||||||  ||||| || | || |||||||||| |||||||||||||    
T  16639099 tgaagaaacacgtccaacacttgcagttgtcactcgtaagagcaaaatcaacttcaaacatttat-aatcataacaaatgtgttgcacttatttgttt 16639003  T

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Target: scaffold0684 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 4254 - 4311
Alignment:
Q  95 ttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 152  Q
    |||||||||| || ||||||||||  |||||| ||||| |||||||||||||||||||    
T  4254 ttgttacttatttgactcttcacatatttcatagctgagaaaacacgttcaacacttg 4311  T

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Target: scaffold0163 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 3864 - 3807
Alignment:
Q  95 ttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 152  Q
    |||||||||| || ||||||||||  |||||| ||||| |||||||||||||||||||    
T  3864 ttgttacttatttgactcttcacatatttcatagctgagaaaacacgttcaacacttg 3807  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 461296 - 461228
Alignment:
Q  83 taatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 152  Q
    |||||||| ||||||| || ||  ||||| |||||||||| ||| | |||||||||||||||||||||||    
T  461296 taatcatccattttgtcacataggttacttttcacaactt-catagttgaaaaaacacgttcaacacttg 461228  T

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Target: scaffold0535 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 9895 - 9955
Alignment:
Q  166 aagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttacacttatttgttt 226  Q
    |||||||||| |||||||||||  |||||||   || |||||||||| |||||||||||||    
T  9895 aagagcaaagtcaacttcaaaatcttataaaatataacaaatgtgttgcacttatttgttt 9955  T

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