View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_low_13 (Length: 545)
Name: NF1408_low_13
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 70 - 538
Target Start/End: Original strand, 44667419 - 44667884
Alignment:
| Q |
70 |
gagacgctttgtgatgcttgtagtattctttgttatcttcattctgttcctctttggtcctgtcgttttcttcttcaggccatggagttccgtctaaacc |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44667419 |
gagacgctttgtgatgcttgtagtattctttgttatcttcattctgttcgtctttggtcctgtcgttttcttcttcaggccatggagttccgtctaaacc |
44667518 |
T |
|
| Q |
170 |
tgcacaactcacatcttctaaagtagcttttatcccttgtttcctcttttgttgaatgtttggatccaatcgctcattcacccctgtgctccttagtttt |
269 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44667519 |
tgcacaactcaaatcttctaaagcagcttttgtcccttgtttcctcttttgttgaatgtttggatccaatcgttcattcacccctgtgctccttagtttt |
44667618 |
T |
|
| Q |
270 |
ggggaagattgatatggagattttggtgactcgaaaattccttcttctttttctgtttcagcaaactttgtatttgtgtcactatcacctctacttgtac |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44667619 |
ggggaagattgatatggagattttggtgactcgaaaattccttcttctttttctgtttcagcaaactttgtatttgtgtcactatcacctctacttgtac |
44667718 |
T |
|
| Q |
370 |
cctacaacaatattattatttcttagtcctcataaatatgtac-nnnnnnnnnnnnnnnnnnncaacttagaaaatgaatttctatcaattctttcttac |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
44667719 |
cctacaacaatattattatttcttagtcctcataaatatgtacatatatataatataataatacaacttagaaaatgaatttctatcaa----ttcttac |
44667814 |
T |
|
| Q |
469 |
ttggggtgagtttctgtagttagtgtaaccgggtttctgttgtcctgaatgaatatcagggtctgtggtg |
538 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
44667815 |
ttggggtgagtttctgtagttagtgtaaccgggtttctgctgtcctgaatgaatatcagggtctgcggtg |
44667884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 70 - 251
Target Start/End: Complemental strand, 8374290 - 8374103
Alignment:
| Q |
70 |
gagacgctttgtgatgcttg-tagtattctttgttatcttcattctgttcctctttggtcctgtcgttttctt---cttcaggccatggagttccgtcta |
165 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| || ||||||| |||||||||| ||||||| |||| |
|
|
| T |
8374290 |
gagacgctttgtgatgcttaatagtattatttgttatcttcattctgttcctctttgctccactctttttcttcttcttcaggcca-agagttccatcta |
8374192 |
T |
|
| Q |
166 |
aacctgcacaactcacatcttctaa---agtagcttttatcccttgtttcctcttttgttgaatgtttggatccaatcgctcattcacc |
251 |
Q |
| |
|
||| |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8374191 |
gaccagcacaactcacatcttctaaagcagcagcttttgtcccttgtttcctcttttgttgaatgtttggatccaatcgctcattcacc |
8374103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 8374091 - 8374047
Alignment:
| Q |
352 |
tatcacctctacttgtaccctacaacaatattattatttcttagt |
396 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8374091 |
tatcacctctacttgtaccctgcaacaatattattatttcttagt |
8374047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University