View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_130 (Length: 294)

Name: NF1408_low_130
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_130
NF1408_low_130
[»] chr4 (3 HSPs)
chr4 (76-294)||(2110030-2110248)
chr4 (31-88)||(22622082-22622138)
chr4 (41-79)||(38031399-38031437)
[»] chr1 (4 HSPs)
chr1 (31-90)||(52761440-52761499)
chr1 (31-77)||(45228493-45228539)
chr1 (32-88)||(17245527-17245582)
chr1 (41-79)||(7110457-7110495)
[»] chr7 (2 HSPs)
chr7 (31-88)||(43113892-43113949)
chr7 (32-88)||(37237072-37237127)
[»] chr8 (3 HSPs)
chr8 (31-86)||(20309141-20309196)
chr8 (31-86)||(21095774-21095829)
chr8 (31-88)||(43584623-43584680)
[»] chr5 (2 HSPs)
chr5 (31-88)||(18654518-18654575)
chr5 (41-79)||(19229069-19229107)
[»] chr6 (1 HSPs)
chr6 (31-79)||(32348892-32348940)
[»] chr3 (2 HSPs)
chr3 (41-79)||(28777536-28777574)
chr3 (31-88)||(43392824-43392880)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 76 - 294
Target Start/End: Original strand, 2110030 - 2110248
Alignment:
Q  76 aaaataaaataaaggaagaaactgtatgcaacatgcggcaatgtcatgttggtatcctacataggtcaaatctattcaattaaaacagaaaaatataaat 175  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  2110030 aaaataaaataaaggaagaaactgtatgcaacatgtggcaatgtcatgttggtattgtacataggtcaaatctattcaattaaaacagaaaaatataaat 2110129  T
Q  176 tatttatagaatggagtaggtaatgtaacctttctttccacagtctatgcaacccagcactcattagatcattcatggtgtcatagtttttagcaacact 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2110130 tatttatagaatggagtaggtaatgtaacctttctttccacagtctatgcaacccagcactcattagatcattcatggtgtcatagtttttagcaacact 2110229  T
Q  276 tgtaaatacatcaccaacc 294  Q
    |||||||||||||||||||    
T  2110230 tgtaaatacatcaccaacc 2110248  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 22622082 - 22622138
Alignment:
Q  31 ttcttccataatcttcatctaaattcatccttcaatcatcttcataaaataaaataaa 88  Q
    ||||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  22622082 ttcttccctcatcttcatctacattcatccttca-tcatcttcataaaataaaataaa 22622138  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 38031399 - 38031437
Alignment:
Q  41 atcttcatctaaattcatccttcaatcatcttcataaaa 79  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  38031399 atcttcatcttcattcatccttcaatcatcttcataaaa 38031437  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 52761499 - 52761440
Alignment:
Q  31 ttcttccataatcttcatctaaattcatccttcaatcatcttcataaaataaaataaagg 90  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  52761499 ttcttccatcatcttcatcttcattcatccttcaatcatcttcataaaataaaataaagg 52761440  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 45228493 - 45228539
Alignment:
Q  31 ttcttccataatcttcatctaaattcatccttcaatcatcttcataa 77  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||||    
T  45228493 ttcttccctcatcttcatctacattcatccttcaatcatcttcataa 45228539  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 17245582 - 17245527
Alignment:
Q  32 tcttccataatcttcatctaaattcatccttcaatcatcttcataaaataaaataaa 88  Q
    |||||||| ||||||||||  |||||||||||| | |||||||||||||||||||||    
T  17245582 tcttccatcatcttcatcttcattcatccttcatt-atcttcataaaataaaataaa 17245527  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 7110457 - 7110495
Alignment:
Q  41 atcttcatctaaattcatccttcaatcatcttcataaaa 79  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  7110457 atcttcatcttcattcatccttcaatcatcttcataaaa 7110495  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 43113892 - 43113949
Alignment:
Q  31 ttcttccataatcttcatctaaattcatccttcaatcatcttcataaaataaaataaa 88  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  43113892 ttcttccatcatcttcatcttcattcatccttcaatcatcttcataaaataaaataaa 43113949  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 37237127 - 37237072
Alignment:
Q  32 tcttccataatcttcatctaaattcatccttcaatcatcttcataaaataaaataaa 88  Q
    |||||||| ||||||||||  |||||||||||| |||||||||||||||||||||||    
T  37237127 tcttccatcatcttcatcttcattcatccttca-tcatcttcataaaataaaataaa 37237072  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 20309141 - 20309196
Alignment:
Q  31 ttcttccataatcttcatctaaattcatccttcaatcatcttcataaaataaaata 86  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  20309141 ttcttccatcatcttcatctccattcatccttcaatcatcttcataaaataaaata 20309196  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 21095774 - 21095829
Alignment:
Q  31 ttcttccataatcttcatctaaattcatccttcaatcatcttcataaaataaaata 86  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  21095774 ttcttccatcatcttcatctccattcatccttcaatcatcttcataaaataaaata 21095829  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 43584623 - 43584680
Alignment:
Q  31 ttcttccataatcttcatctaaattcatccttcaatcatcttcataaaataaaataaa 88  Q
    ||||||||| ||||||||||  |||| |||||||||||| |||||||||| |||||||    
T  43584623 ttcttccatcatcttcatcttcattcgtccttcaatcatattcataaaatcaaataaa 43584680  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 18654518 - 18654575
Alignment:
Q  31 ttcttccataatcttcatctaaattcatccttcaatcatcttcataaaataaaataaa 88  Q
    ||||||| | ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  18654518 ttcttccctcatcttcatcttcattcatccttcaatcatcttcataaaataaaataaa 18654575  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 19229069 - 19229107
Alignment:
Q  41 atcttcatctaaattcatccttcaatcatcttcataaaa 79  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  19229069 atcttcatcttcattcatccttcaatcatcttcataaaa 19229107  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 32348940 - 32348892
Alignment:
Q  31 ttcttccataatcttcatctaaattcatccttcaatcatcttcataaaa 79  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  32348940 ttcttccatcatcttcatcttcattcatccttcaatcatcttcataaaa 32348892  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 28777574 - 28777536
Alignment:
Q  41 atcttcatctaaattcatccttcaatcatcttcataaaa 79  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  28777574 atcttcatcttcattcatccttcaatcatcttcataaaa 28777536  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 43392824 - 43392880
Alignment:
Q  31 ttcttccataatcttcatctaaattcatccttcaatcatcttcataaaataaaataaa 88  Q
    ||||||| | ||||||||||  ||||| |||||| |||||||||||||||||||||||    
T  43392824 ttcttccctcatcttcatcttcattcaaccttca-tcatcttcataaaataaaataaa 43392880  T

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