View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_135 (Length: 290)
Name: NF1408_low_135
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_135 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 41103148 - 41103335
Alignment:
| Q |
55 |
aacctgtgaagcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaa |
154 |
Q |
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| T |
41103148 |
aacctgtgaagcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaa |
41103247 |
T |
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| Q |
155 |
tcaagcgttctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcatcagtgcgctttctctgc |
242 |
Q |
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| T |
41103248 |
tcaagcgttctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcattaatgcgctttctctgc |
41103335 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 23129044 - 23129108
Alignment:
| Q |
134 |
tctgaaatcgcttcgtataaatcaagcgttctgaacattttctccggagttttcttgcattttgc |
198 |
Q |
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| T |
23129044 |
tctgaaattgcttcgtataaatcaagagttctgaacattttctcaggagttttcttgcattttgc |
23129108 |
T |
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