View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_137 (Length: 288)

Name: NF1408_low_137
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_137
NF1408_low_137
[»] chr1 (5 HSPs)
chr1 (90-234)||(383881-384025)
chr1 (90-233)||(19040194-19040337)
chr1 (46-110)||(384039-384103)
chr1 (46-85)||(19040117-19040156)
chr1 (72-163)||(39335709-39335799)
[»] chr4 (9 HSPs)
chr4 (90-233)||(22206685-22206827)
chr4 (90-209)||(23142110-23142229)
chr4 (46-110)||(22206841-22206905)
chr4 (92-155)||(15738161-15738224)
chr4 (72-163)||(26629013-26629103)
chr4 (46-85)||(15738264-15738303)
chr4 (46-88)||(23141966-23142008)
chr4 (46-86)||(8652009-8652049)
chr4 (46-86)||(8663816-8663856)
[»] chr5 (1 HSPs)
chr5 (90-233)||(1997860-1998003)
[»] chr3 (1 HSPs)
chr3 (92-233)||(33815747-33815888)
[»] chr8 (6 HSPs)
chr8 (90-233)||(44073885-44074028)
chr8 (46-110)||(44073807-44073871)
chr8 (72-165)||(36838271-36838363)
chr8 (102-163)||(36837856-36837917)
chr8 (72-165)||(36838051-36838143)
chr8 (102-163)||(36838521-36838582)
[»] chr7 (1 HSPs)
chr7 (90-233)||(4658556-4658699)
[»] chr2 (1 HSPs)
chr2 (72-163)||(28504537-28504627)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 90 - 234
Target Start/End: Complemental strand, 384025 - 383881
Alignment:
Q  90 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 189  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||  |    
T  384025 tgttttcaattgccatcatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttgaatcaacagttgtgattaagtgtgtggttgaga 383926  T
Q  190 gattagattaacaacaattacatgcttaagaggggaaaatgcaac 234  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  383925 gattagattagcaacaattacatgcttaggagggaaaaatgcaac 383881  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 19040194 - 19040337
Alignment:
Q  90 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 189  Q
    |||||||||||| ||||||||||||| |||||||||||||||  |||||||||||||||| ||||| ||||||| | ||| | ||||||| ||||||| |    
T  19040194 tgttttcaattgtcattatgacgtttttgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaacggctgtgattaagtgtctggttggga 19040293  T
Q  190 gattagattaacaacaattacatgcttaagaggggaaaatgcaa 233  Q
    |||||||||| ||| |||||| |||||| ||| | |||||||||    
T  19040294 gattagattagcaataattacctgcttatgagagaaaaatgcaa 19040337  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 384103 - 384039
Alignment:
Q  46 tgagatgaagggagtggttgactgagttgattagcattaatacgtgttttcaattgccattatga 110  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  384103 tgagatgaagggagtggttgactgagttgattatcattaatatgtgttttcaattgccattatga 384039  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 19040117 - 19040156
Alignment:
Q  46 tgagatgaagggagtggttgactgagttgattagcattaa 85  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  19040117 tgagatgaagagagtggttgactgacttgattagcattaa 19040156  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 39335709 - 39335799
Alignment:
Q  72 ttgattagcattaa-tacgtgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaac 163  Q
    |||||||||||||| |||||  |||||||  ||||||||| || ||| |||||||||| ||  ||| |||||||||||| ||||| |||||||    
T  39335709 ttgattagcattaactacgt--tttcaatgaccattatgatgtatctatatgagagaggaaatgagtagtttgaaaatagagtttgaatcaac 39335799  T

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Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 22206827 - 22206685
Alignment:
Q  90 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 189  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||||||||| |||| |    
T  22206827 tgttttcaattgccattatgacatttctgtatgagagagaaagcgaggagtttgaaaataaagtttgaatcaacggttgtgattaagtgtgtgattggga 22206728  T
Q  190 gattagattaacaacaattacatgcttaagaggggaaaatgcaa 233  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  22206727 gattagattagcaataattacatgcttaaga-gggaaaatgcaa 22206685  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 23142110 - 23142229
Alignment:
Q  90 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 189  Q
    |||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||| ||||| ||||||| ||||| | ||||||||||||||| |    
T  23142110 tgttttcaattgccattatgccgtttctgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaacggttgtgattaagtgtgtggttggga 23142209  T
Q  190 gattagattaacaacaatta 209  Q
     ||||||||| ||| |||||    
T  23142210 tattagattagcaataatta 23142229  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 22206905 - 22206841
Alignment:
Q  46 tgagatgaagggagtggttgactgagttgattagcattaatacgtgttttcaattgccattatga 110  Q
    |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  22206905 tgagatgaagggagcggttgactgagttgattaacattaatatgtgttttcaattgccattatga 22206841  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 15738224 - 15738161
Alignment:
Q  92 ttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagttt 155  Q
    |||| ||||| |||||||||||||||||||||||||||||  |||||||||||||||| |||||    
T  15738224 tttttaattgtcattatgacgtttctgtatgagagagaaaatgaggagtttgaaaatagagttt 15738161  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 26629013 - 26629103
Alignment:
Q  72 ttgattagcattaa-tacgtgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaac 163  Q
    |||||||||||||| |||||  ||||||| ||||||||||||| |||||||||||||| ||   || |||||||||||| ||||| |||||||    
T  26629013 ttgattagcattaactacgt--tttcaatggccattatgacgtatctgtatgagagaggaaataagtagtttgaaaatagagtttgaatcaac 26629103  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 15738303 - 15738264
Alignment:
Q  46 tgagatgaagggagtggttgactgagttgattagcattaa 85  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  15738303 tgagatgaagggagtggttgactaacttgattagcattaa 15738264  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 23141966 - 23142008
Alignment:
Q  46 tgagatgaagggagtggttgactgagttgattagcattaatac 88  Q
    ||||||| |||| |||||||||||||||||||| |||||||||    
T  23141966 tgagatgtagggggtggttgactgagttgattaacattaatac 23142008  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 8652009 - 8652049
Alignment:
Q  46 tgagatgaagggagtggttgactgagttgattagcattaat 86  Q
    ||||||| | ||||||||||||||||||||||| |||||||    
T  8652009 tgagatgtaaggagtggttgactgagttgattaacattaat 8652049  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 8663816 - 8663856
Alignment:
Q  46 tgagatgaagggagtggttgactgagttgattagcattaat 86  Q
    ||||||| | ||||||||||||||||||||||| |||||||    
T  8663816 tgagatgtaaggagtggttgactgagttgattaacattaat 8663856  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 1997860 - 1998003
Alignment:
Q  90 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 189  Q
    |||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||| ||||| ||||||| ||||| | |||||||||||||   |    
T  1997860 tgttttcaattgccattatgacgtttttgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaacggttgtgattaagtgtgtggttatga 1997959  T
Q  190 gattagattaacaacaattacatgcttaagaggggaaaatgcaa 233  Q
    |||||||||| ||| |||||| |||||| | ||| |||||||||    
T  1997960 gattagattagcaataattacctgcttaggtgggaaaaatgcaa 1998003  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 33815747 - 33815888
Alignment:
Q  92 ttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaacagttgtaaataagtgtgtggttggtaga 191  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||||||||||| ||||| ||||||| | ||| | ||||||||||||||  |||    
T  33815747 ttttcaattgccattatgacatttctgtatgagagagaaaatgaggagtttgaaaatagagtttgaatcaacggctgtgattaagtgtgtggttgagaga 33815846  T
Q  192 ttagattaacaacaattacatgcttaagaggggaaaatgcaa 233  Q
    |||||||| ||| |||||| | |||| ||||| |||||||||    
T  33815847 ttagattagcaataattacctacttaggagggaaaaatgcaa 33815888  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 44073885 - 44074028
Alignment:
Q  90 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 189  Q
    |||||||||||||||||||||| ||||||||||||||| |||| || ||||||||||||| ||||| |||||||   ||| | ||||||||||||||| |    
T  44073885 tgttttcaattgccattatgacatttctgtatgagagaaaaagtgatgagtttgaaaatagagtttgaatcaacgactgtgattaagtgtgtggttggga 44073984  T
Q  190 gattagattaacaacaattacatgcttaagaggggaaaatgcaa 233  Q
    || || ||||  || |||| |||||||| ||||| |||||||||    
T  44073985 gaataaattagtaataattgcatgcttaggagggaaaaatgcaa 44074028  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 44073807 - 44073871
Alignment:
Q  46 tgagatgaagggagtggttgactgagttgattagcattaatacgtgttttcaattgccattatga 110  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44073807 tgagatgaagggagtggttgactgagttgattaacattaatacgtgttttcaattgccattatga 44073871  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 36838271 - 36838363
Alignment:
Q  72 ttgattagcattaat-acgtgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaacag 165  Q
    ||||||||||||||| ||||  |||||||  |||||||||||| |||||||||||||| ||  ||| |||||||||||||||||| |||||||||    
T  36838271 ttgattagcattaattacgt--tttcaatgaccattatgacgtatctgtatgagagaggaaatgagtagtttgaaaataaagtttgaatcaacag 36838363  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 36837856 - 36837917
Alignment:
Q  102 ccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaac 163  Q
    |||||||||||| |||||||||||||| ||  ||| |||||||||||| ||||| |||||||    
T  36837856 ccattatgacgtatctgtatgagagaggaaatgagtagtttgaaaatagagtttgaatcaac 36837917  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 36838051 - 36838143
Alignment:
Q  72 ttgattagcattaat-acgtgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaacag 165  Q
    ||||||||||||||| ||||  ||||||| ||||||||||||| ||||||||| |||| ||   || ||||| |||||| ||||| |||||||||    
T  36838051 ttgattagcattaattacgt--tttcaatggccattatgacgtatctgtatgaaagaggaaattagaagtttaaaaatagagtttgaatcaacag 36838143  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 36838521 - 36838582
Alignment:
Q  102 ccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaac 163  Q
    |||||||||||| | |||||||||||| ||  ||| |||||||||||| ||||| |||||||    
T  36838521 ccattatgacgtatttgtatgagagaggaaatgagtagtttgaaaatagagtttgaatcaac 36838582  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 4658556 - 4658699
Alignment:
Q  90 tgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaacagttgtaaataagtgtgtggttggta 189  Q
    |||| ||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||| | | | | ||||||| ||||||  |    
T  4658556 tgttatcaattgtcattatgaagtttctgtatgagagagaaagtgaggagtttgaaaatagagtttgaatcaacggctttgattaagtgtatggttgtga 4658655  T
Q  190 gattagattaacaacaattacatgcttaagaggggaaaatgcaa 233  Q
    |||||||||| |   ||||||||||||| ||| | |||||||||    
T  4658656 gattagattagctctaattacatgcttaggagagaaaaatgcaa 4658699  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 28504537 - 28504627
Alignment:
Q  72 ttgattagcattaa-tacgtgttttcaattgccattatgacgtttctgtatgagagagaaagcgaggagtttgaaaataaagtttaaatcaac 163  Q
    |||||||||||||| |||||  |||||||  |||||||||||| |||||||||||||| ||  ||| |||||||||||| | ||| |||||||    
T  28504537 ttgattagcattaactacgt--tttcaatgaccattatgacgtatctgtatgagagaggaaatgagtagtttgaaaatagaatttgaatcaac 28504627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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