View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_139 (Length: 288)
Name: NF1408_low_139
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_139 |
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| [»] scaffold0303 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 56 - 241
Target Start/End: Complemental strand, 28860050 - 28859865
Alignment:
| Q |
56 |
aggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggcaaaacacctc |
155 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28860050 |
aggtgagcaaaatcttcctgactagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaatccgggtgggcaaaacacctc |
28859951 |
T |
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| Q |
156 |
gacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccggcctgtgatgatgt |
241 |
Q |
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| T |
28859950 |
gacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttccccgcctgcgaagatgt |
28859865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 18119205 - 18119016
Alignment:
| Q |
52 |
gaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggcaaaaca |
151 |
Q |
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| T |
18119205 |
gaacaggtgagcaaaatctttctgaccagaattgcaatttacacagtcagttggacaacgaacccctttataatgtagtctaatccgggtgggcaaaaca |
18119106 |
T |
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| Q |
152 |
cctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccggcctgtgatgatgt |
241 |
Q |
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| T |
18119105 |
cctcgacacatacgccaaaccaagttcttcacttttggtgggactttaagtctccaaattccagaccaatttcccggcccgtgaagatgt |
18119016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 10770481 - 10770292
Alignment:
| Q |
52 |
gaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggcaaaaca |
151 |
Q |
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| T |
10770481 |
gaacagatgagcaaaatcttcctgaccaaaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaatccgggtgggcgaaaaa |
10770382 |
T |
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| Q |
152 |
cctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccggcctgtgatgatgt |
241 |
Q |
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| T |
10770381 |
cctcgacacatatgccaaaccaagttcttcacttttggtggaactttgagtctccaaattccagaccaattgcccgacctgcgaagatgt |
10770292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 13461 - 13272
Alignment:
| Q |
52 |
gaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggcaaaaca |
151 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13461 |
gaacaggtgagcaaaatcttcctgaccagaatttcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaatccgggtgggcaaaaca |
13362 |
T |
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| Q |
152 |
cctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccggcctgtgatgatgt |
241 |
Q |
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| T |
13361 |
cattgacacatacgccaaaccaagttcttcacttttggtgggactttgaatctccaaattctagaccaatttcccggcctgcgaagatgt |
13272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 17753129 - 17753318
Alignment:
| Q |
52 |
gaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggcaaaaca |
151 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
17753129 |
gaacaggtgagcaaaatcatcctgaccagaattccaatttacacagtcagttggacaatgaacccctttatcatgtggtctaatctgggtgggcaaaaca |
17753228 |
T |
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| Q |
152 |
cctcgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccggcctgtgatgatgt |
241 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
17753229 |
cctcgacacatacgccaaaccaagtttttcacttttggtgggactttgagtctccaaattccaaaccaatttctcggcctgtgaagatgt |
17753318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 102 - 233
Target Start/End: Original strand, 22738653 - 22738784
Alignment:
| Q |
102 |
ttggacaatgaacccctttatcatgtagtctaattcgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgag |
201 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22738653 |
ttggacaatgaacccctttatcatgtagtctaatccgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcacttttggtgggactttgag |
22738752 |
T |
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| Q |
202 |
tctccaaattccagaccaatttcccggcctgt |
233 |
Q |
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| T |
22738753 |
tctccaaattccagaccaattgcctggcctgt |
22738784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 22737333 - 22737387
Alignment:
| Q |
52 |
gaacaggtgagcaaaatcttcctgaccagaattgcaatttacacagtcagttgga |
106 |
Q |
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|||||| |||||||| ||||| ||||||||| |||||||||||||||||||||| |
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| T |
22737333 |
gaacagatgagcaaactcttctcgaccagaatagcaatttacacagtcagttgga |
22737387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 27492493 - 27492349
Alignment:
| Q |
86 |
caatttacacagtcagttggacaatgaacccctttatcatgtagtctaattcgggtgggcaaaacacctcgacacatacgccaaaccaagttcttcactt |
185 |
Q |
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||||| ||| ||||||||||||| ||||||| ||||||||| ||| ||| | || |||||| || |||||||| |||||||||||||||||||| | |
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| T |
27492493 |
caattaacatagtcagttggacattgaaccc-tttatcatgaagtgtaacccaagttggcaaacaactccgacacattcgccaaaccaagttcttcacct |
27492395 |
T |
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| Q |
186 |
ttggtgggactttgagtctccaaattccagaccaatttcccggcct |
231 |
Q |
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| ||||||||||| |||||||||||| ||||||||| |||||||| |
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| T |
27492394 |
tgggtgggactttaagtctccaaatttcagaccaatagcccggcct |
27492349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 27457332 - 27457259
Alignment:
| Q |
155 |
cgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaatttcccgg |
228 |
Q |
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| T |
27457332 |
cgacaaattcgccataccaagtttttgacttttggtgggactttaagtttccaaatccccgaccagtatcccgg |
27457259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 20247390 - 20247325
Alignment:
| Q |
155 |
cgacacatacgccaaaccaagttcttcacttttggtgggactttgagtctccaaattccagaccaa |
220 |
Q |
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|||||||| ||||||| ||| ||||| ||||| ||||| ||||| ||||||||||| |||||||| |
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| T |
20247390 |
cgacacattcgccaaatcaaattctttactttaggtggaactttcagtctccaaataacagaccaa |
20247325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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