View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_141 (Length: 288)
Name: NF1408_low_141
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_141 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9695647 - 9695456
Alignment:
| Q |
1 |
taaaagtaattacaattcccatattgtaagcacgcattgtcttctcatactcctccttcaatttatcagccttagcaatgaatggagccttatcctaaaa |
100 |
Q |
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| T |
9695647 |
taaaagtaattacaattcccatattgtaagcacgcattgttttctcatactcctccttcaatttatcagccttagcaatgaatggagccttatcctaaaa |
9695548 |
T |
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| Q |
101 |
tacacaaatcacaaaaacgactttaaaatcaaaactaagagaattagattaatttccttcggtgaaacagaagcaaaattctcacagcatca |
192 |
Q |
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| T |
9695547 |
tacacaaatcacaaaaacgactttaaaatcaaaactaagagaattagattaatttccttcggtgaaacagaagcaaaattctcacagcatca |
9695456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 30439910 - 30440029
Alignment:
| Q |
1 |
taaaagtaattacaattcccatattgtaagcacgcattgtcttctcatactcctccttcaatttatcagccttagcaatgaatggagccttatcctaaaa |
100 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| || || ||| ||||||||||||| |||||||||||||||| |
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| T |
30439910 |
taaaagtaattacaattcccatattgtacgcaagcattgtctcctcatactcctccttgaacttctcaaacttagcaatgaatcgagccttatcctaaaa |
30440009 |
T |
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| Q |
101 |
tacac--aaatcacaaaaac |
118 |
Q |
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| T |
30440010 |
tacacataaatcacaaaaac |
30440029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 14849 - 15039
Alignment:
| Q |
7 |
taattacaattcccatattgtaagcacgcattgtcttctcatactcctccttcaatttatcagccttagcaatgaatggagccttatcctaaaatacac- |
105 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
14849 |
taattacaattcccatgttgtaagcacgcattgtcttctcatactcctccttcaacttctcagccttagcaatgaatggagccttatcctaaaatacaca |
14948 |
T |
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| Q |
106 |
-aaatcacaaaaacgactttaaaatcaaa--actaa--gagaattagattaatttccttcggtgaaacagaagcaaaattctcacagcatc |
191 |
Q |
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|||||||||||| || |||||||||||| || || ||| ||| |||||||| |||| |||||||||| | |||||||||||||||| |
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| T |
14949 |
taaatcacaaaaatgaatttaaaatcaaaacacgaattaagatttatattaattttcttcagtgaaacagaggtgaaattctcacagcatc |
15039 |
T |
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