View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_15 (Length: 534)
Name: NF1408_low_15
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 5e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 137 - 316
Target Start/End: Complemental strand, 52518892 - 52518710
Alignment:
| Q |
137 |
gagacatcgacaattatattagatgagtggcatgggccattgcagagtaagggtaaagacagaaaagtgctaaaagcaaagccaagctgcccatgctctg |
236 |
Q |
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| T |
52518892 |
gagacatcgacaattatattagatgagtggcatgggccattgcagagtaagggtgaagacagaaaagtgctaaaagcaaagccaagctgcccatgctctg |
52518793 |
T |
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| Q |
237 |
atttcatattttcctccatcatcttttcgtctgatgt---ctattgtgatgctgactaaatatttatatcactccctttgccg |
316 |
Q |
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| T |
52518792 |
atttcatattttcctccatcatcttttcgtctgatgtgaactattgtgatgctgactaaatatttatatcactccctttgccg |
52518710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 52519027 - 52518917
Alignment:
| Q |
1 |
ttatattcttttctggctacgtgggggtacaaagatatgaatataaattaagaaaagtttaatttaaaaaggtttggtagtaggaagaatataatggttg |
100 |
Q |
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| T |
52519027 |
ttatattcttttctggctacgtgggggtacaaagatatgaatataaattaagaaaagtttaatttaaaaaggtttggtagtaggaagaatataatggttg |
52518928 |
T |
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| Q |
101 |
ttcttttttgt |
111 |
Q |
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| T |
52518927 |
ttcttttttgt |
52518917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 391 - 506
Target Start/End: Complemental strand, 52518635 - 52518520
Alignment:
| Q |
391 |
tacaataactctaatttaattataacactagattaggtctcccataatacgtagatgtttgagtttaaatctaaaatatttgaattctttacgtttaaaa |
490 |
Q |
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| T |
52518635 |
tacaataactctaatttaattataatactagattaggtctcccataatacgtagatgtttgagtttaaatttaaaatattcaaattctttacgtttaaaa |
52518536 |
T |
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| Q |
491 |
tgcgtgagtagttatt |
506 |
Q |
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| T |
52518535 |
tgcgtgagtagttatt |
52518520 |
T |
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