View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_152 (Length: 274)
Name: NF1408_low_152
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_152 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 38 - 240
Target Start/End: Complemental strand, 41556344 - 41556142
Alignment:
| Q |
38 |
aaggtgaaaaatagacccgagcctctattacaagcaatattatcaatagaatcatgtttgtatgaactatgaataccatattcaagcatgcggcctatat |
137 |
Q |
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| T |
41556344 |
aaggtgaaaaatagacccgagcctctattacaagcaatattataaatagaatcatgtttgtatgaactatgaataccatattcaagcatgcggcctatat |
41556245 |
T |
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| Q |
138 |
ttacgattcaaaatgacagtataaagctttaatctaaagtctgcaaagaaagatcatccatggaaaaattctaaagaccagtgaataaaggtacgcaaca |
237 |
Q |
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| T |
41556244 |
ttacgattcaaaatgacagtataaagctttaatctaaagtctgcaaagaaagatcatccatggaaaaattctaaagaccagtgaataaaggtacgcaaca |
41556145 |
T |
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| Q |
238 |
gct |
240 |
Q |
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| T |
41556144 |
gct |
41556142 |
T |
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