View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_156 (Length: 266)
Name: NF1408_low_156
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_156 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 81 - 245
Target Start/End: Complemental strand, 4999400 - 4999236
Alignment:
| Q |
81 |
gaacaatatcatgatcaagcaatatattattactcttcacatccctatgaacaatagcaggaacacaatcatggtgtaaataagccaaccctttagcagc |
180 |
Q |
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| T |
4999400 |
gaacaaaatcatgatcaagcaatatgttattactcttcacatccctatgaacaatagcaggaacacaatcatggtgtaaataagccaaccctttagcagc |
4999301 |
T |
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| Q |
181 |
acctaaagcaattccaaatctcttagaccaatccaactccacaaacttctcctcatgcaaaacat |
245 |
Q |
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| T |
4999300 |
acctaaagcaattccaaatctcttagaccaatccaactccacaaacttcccctcatgcaaaacat |
4999236 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 167
Target Start/End: Complemental strand, 21468560 - 21468521
Alignment:
| Q |
128 |
tgaacaatagcaggaacacaatcatggtgtaaataagcca |
167 |
Q |
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| T |
21468560 |
tgaacaataggaggagcacaatcatggtgtaaataagcca |
21468521 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 38868357 - 38868291
Alignment:
| Q |
98 |
agcaatatattattactcttcacatccctatgaacaatagcaggaacacaatcatggtgtaaataag |
164 |
Q |
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| T |
38868357 |
agcaatatattactagattttacatccctatgaacaataggaacaacacaatcatggtgcaaataag |
38868291 |
T |
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