View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_16 (Length: 532)
Name: NF1408_low_16
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 30 - 522
Target Start/End: Complemental strand, 51732420 - 51731929
Alignment:
| Q |
30 |
tttgtggcttgccttgttctaaaacttcaccatctattgcaaacccatttgcttgtgccgcaaaatttattaagtccgcgttattcatttttgacacaaa |
129 |
Q |
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| T |
51732420 |
tttgtggcttgccttgttctaaaacttcaccatctattgcaaacccatttgcttgtgccgcaaaatttattaagtccgcgttattcatttttgacacaaa |
51732321 |
T |
|
| Q |
130 |
atctgatgtatctatagcttcaccaattgctttgttcattttgtgtagttcttccagcaataaatcacgagaagttaataatgctctgacaagcatgata |
229 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51732320 |
atctgacgtatctatagcttcaccaattgctttgttcattttgtgtagttcttccagcaataaatcacgagaagttaataatgctctgacaagcatgata |
51732221 |
T |
|
| Q |
230 |
tctttcacatctagagaagtaacacctctgaagcgctgcacaggaacgcaaaacattctcctgttaatgcttgaagaataatgattggaaaaaatatgaa |
329 |
Q |
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| T |
51732220 |
tctttcacatctagagaagtaacacctctgaagcgctgcacaggcacgaaaaacattctcctgttaatgcttgaagaataatgattggaaaaaatatgaa |
51732121 |
T |
|
| Q |
330 |
cgggagggcttttattaccccatattactaaaaaacacatacaagtattgaaattaccataagtcctatgtgacattccttaaataactttaaccctatt |
429 |
Q |
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| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51732120 |
c-ggagggcttttattaccccatattactaaagtacacatacaagtattgaaattaccataagtcctatgtgacattccttaaataactttaaccctatt |
51732022 |
T |
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| Q |
430 |
tttagcactggaggaaaggtttttgctagtgtctatggtaggcatccttgccttgcattagttagatgtgaaattcacaactcaatgcctatg |
522 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51732021 |
tttagcactggaggaaaggtttttgctagtgtctatggtaggcatccttgccttgcattagttagatgtgaaattcacaactcaatgtctatg |
51731929 |
T |
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