View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_161 (Length: 263)
Name: NF1408_low_161
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_161 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 49 - 256
Target Start/End: Complemental strand, 37149774 - 37149567
Alignment:
| Q |
49 |
atattaaataaataattgcaggagtacctgggtttgcagcatggttgggaatagaggtactagcagatccaaagccaggatcaaatgtgttcatatctgc |
148 |
Q |
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| T |
37149774 |
atattaactaaataattgcaggagtacctgggtttgcagcatggttgggaatagaggtactaggaaacccaaagccagcatcaaatgtgttcatatctgc |
37149675 |
T |
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| Q |
149 |
tgcatctggtgctgttggtatgattgctggccaacttgctaagatacgaggatgtcgggtcattggcagcactggctctgatgataaggtaacctagcag |
248 |
Q |
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| T |
37149674 |
tgcatctggtgctgttggtatgattgctggtcaacttgctaagatacgaggatgtcgggtcattggcagcactggctctgatgataaggtaacctagcag |
37149575 |
T |
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| Q |
249 |
tattatct |
256 |
Q |
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|||||||| |
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| T |
37149574 |
tattatct |
37149567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 61 - 244
Target Start/End: Complemental strand, 37160896 - 37160713
Alignment:
| Q |
61 |
taattgcaggagtacctgggtttgcagcatggttgggaatagaggtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgc |
160 |
Q |
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| T |
37160896 |
taattgcaggagtaccggggtttgcagcatgggtgggaatagaggtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgc |
37160797 |
T |
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| Q |
161 |
tgttggtatgattgctggccaacttgctaagatacgaggatgtcgggtcattggcagcactggctctgatgataaggtaaccta |
244 |
Q |
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| T |
37160796 |
tgtcggtataaatgctggccagctggctaagatccgaggatgtagggtcatcggcagcactggctctgatgataaggtaaccta |
37160713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 37153722 - 37153546
Alignment:
| Q |
62 |
aattgcaggagtacctgggtttgcagcatggttgggaatagaggtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgct |
161 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||| |||||||||||||||||||||||| |
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| T |
37153722 |
aattgcaggagtagcggggtttgcagcatggttgggaatagaggtaataggagatccaaaaccaggatcacatgtattcatatctgctgcatctggtgct |
37153623 |
T |
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| Q |
162 |
gttggtatgattgctggccaacttgctaagatacgaggatgtcgggtcattggcagcactggctctgatgataaggt |
238 |
Q |
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| T |
37153622 |
gtaggtatgagtgctggccagcttgctaagatccgaggatgtcgggtcatcggaagcacgggctccgatgataaggt |
37153546 |
T |
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