View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_163 (Length: 262)
Name: NF1408_low_163
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_163 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 39663102 - 39662867
Alignment:
| Q |
30 |
ctttctgctattcggaacaactgccaatataat---ttgggccaggcccatcataaactaaagaccgttgatgccgtcagttctgagtctgggtctgatt |
126 |
Q |
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| T |
39663102 |
ctttctgctattaggaacaactgccaatataataatttgggccaggcccatcataaactaaagaccgttgatgccgttagttctgagtctgggtctgatt |
39663003 |
T |
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| Q |
127 |
tctcgattttggcctctactgtgcacgtgtaggacactatacagttagtgtcctacctgtgaccttatttaggtcgcaaagtagagttgtcactttggtt |
226 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| ||||||| |||||||||||||||||||| |||| |
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| T |
39663002 |
tctcaattttggcctctactgtgcacgtgtaggacactataccgttagtgttctacgtgtgaccttgtttaggttgcaaagtagagttgtcacttcggtt |
39662903 |
T |
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| Q |
227 |
cttcatctagaacccttatgtattatcattgaataa |
262 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
39662902 |
cttcatctagaacccttatgtattatcattgaataa |
39662867 |
T |
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