View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_170 (Length: 259)

Name: NF1408_low_170
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_170
NF1408_low_170
[»] scaffold0145 (1 HSPs)
scaffold0145 (20-253)||(12552-12785)
[»] chr4 (5 HSPs)
chr4 (20-253)||(16284932-16285165)
chr4 (20-177)||(18231449-18231604)
chr4 (21-177)||(11555916-11556070)
chr4 (34-147)||(11098355-11098468)
chr4 (188-253)||(11098291-11098356)
[»] chr6 (4 HSPs)
chr6 (20-253)||(10641216-10641449)
chr6 (20-252)||(14970060-14970294)
chr6 (20-175)||(10906699-10906854)
chr6 (61-177)||(9191065-9191181)
[»] chr7 (5 HSPs)
chr7 (21-177)||(22614701-22614857)
chr7 (20-177)||(11655474-11655631)
chr7 (20-250)||(20025970-20026200)
chr7 (34-135)||(13477489-13477596)
chr7 (76-248)||(4531649-4531820)
[»] chr5 (2 HSPs)
chr5 (20-253)||(24831922-24832161)
chr5 (36-171)||(13935715-13935849)
[»] chr3 (6 HSPs)
chr3 (20-253)||(14481522-14481761)
chr3 (86-253)||(17790941-17791108)
chr3 (86-253)||(19099381-19099548)
chr3 (110-170)||(22159871-22159931)
chr3 (110-170)||(21975275-21975335)
chr3 (110-170)||(21997706-21997766)
[»] chr2 (3 HSPs)
chr2 (33-248)||(44586360-44586574)
chr2 (144-253)||(24786268-24786377)
chr2 (86-171)||(16862347-16862432)
[»] scaffold1001 (1 HSPs)
scaffold1001 (20-177)||(1389-1545)
[»] chr1 (1 HSPs)
chr1 (58-171)||(1567041-1567154)


Alignment Details
Target: scaffold0145 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 12552 - 12785
Alignment:
Q  20 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12552 gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc 12651  T
Q  120 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  12652 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca 12751  T
Q  220 acatccatttattttattttagtattcatctcac 253  Q
    ||||||||||||||||||||||||||||||||||    
T  12752 acatccatttattttattttagtattcatctcac 12785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 16285165 - 16284932
Alignment:
Q  20 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16285165 gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc 16285066  T
Q  120 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 219  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  16285065 atagttataggactccccatcattactctttatcatccacttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca 16284966  T
Q  220 acatccatttattttattttagtattcatctcac 253  Q
    ||||||||||||||||||||||||||||||||||    
T  16284965 acatccatttattttattttagtattcatctcac 16284932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 18231604 - 18231449
Alignment:
Q  20 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 119  Q
    |||||| ||||||||||||||||||||||| ||  ||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  18231604 gacatcgtcattctcatcattattataatataacatcatcattttctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtt 18231505  T
Q  120 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 177  Q
    | || ||| ||| ||| |||||||||||| ||||| ||| ||||||||||||||||||    
T  18231504 acag-tat-ggattcctcatcattactctctatcaaccgtttatatcaccaccttatc 18231449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 11555916 - 11556070
Alignment:
Q  21 acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta 120  Q
    ||||| ||||||||||||||||||||||| ||  ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |    
T  11555916 acatcgtcattctcatcattattataatataacatcaacatttcctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtga 11556015  T
Q  121 tagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 177  Q
     || ||| ||| ||  |||||||||||| ||||| ||  ||||||||||||||||||    
T  11556016 cag-tat-ggattcatcatcattactctctatcaaccatttatatcaccaccttatc 11556070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 11098468 - 11098355
Alignment:
Q  34 catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggact 133  Q
    |||||||||||||||| ||  |||| ||||||||   |||||||||||||||||||||||||||||| ||||||| ||||||  ||| | ||||||||||    
T  11098468 catcattattataatataacatcattatttcccacaatagtaatttctttacatatatataatattaatcgtcatcactctccattacaattataggact 11098369  T
Q  134 ccccatcattactc 147  Q
    || |||||||||||    
T  11098368 cctcatcattactc 11098355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 11098356 - 11098291
Alignment:
Q  188 tccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcac 253  Q
    ||||||||||| ||||||||| || || |  ||||||| ||||||||| |||| ||||||||||||    
T  11098356 tccacaccttatgcgtgactccttatacgtcaacatccctttattttactttattattcatctcac 11098291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 10641449 - 10641216
Alignment:
Q  20 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 119  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||     
T  10641449 gacatcatcattctcatcattattataatataacctcataatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcgctctctgtc 10641350  T
Q  120 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 219  Q
    | |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||   || ||| ||||| ||| ||| ||||||||||||| || |    
T  10641349 acagttataggactcctcgtcattactctctatcatccgcttatatcaccaccttatctcttcattaatccacgcctcacgtgtgactcattctacgcca 10641250  T
Q  220 acatccatttattttattttagtattcatctcac 253  Q
    ||||||||||| ||||||||| ||||||||||||    
T  10641249 acatccatttactttattttattattcatctcac 10641216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 14970060 - 14970294
Alignment:
Q  20 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatat--atataatattactcgtcattactctctg 117  Q
    |||||| ||||||||||  ||||||||||| ||  ||||||||||||||||  ||||||||| || ||||  |||||||||||  |||||| | ||| ||    
T  14970060 gacatcgtcattctcattgttattataatataacatcatcatttcccatcgcggtaatttctataaatatatatataatattaaccgtcatcattctttg 14970159  T
Q  118 ttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgc 217  Q
    | | |||| ||||||||| |||||||||||| ||||||||  |||||||||||| |||||   || ||| ||||||| ||||| |||||||||||||       
T  14970160 tcacagttgtaggactcctcatcattactctctatcatccatttatatcaccactttatctcttcattaatccacactttacgagtgactcattctacat 14970259  T
Q  218 taacatccatttattttattttagtattcatctca 252  Q
     ||||| | |||||||||||||| ||||| |||||    
T  14970260 caacattcctttattttattttattattcttctca 14970294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 10906854 - 10906699
Alignment:
Q  20 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 119  Q
    |||||| ||||||||||||||||||||||| ||  |||||||||| |||| || | || | || ||||||| |||||||||  |  | | |||||||||     
T  10906854 gacatcgtcattctcatcattattataatataacatcatcatttcacatcctatttatatgttgacatatacataatattaacccccttcactctctgtc 10906755  T
Q  120 atagttataggactccccatcattactctttatcatccgcttatatcaccacctta 175  Q
      |||||||||| ||| | |||||||||||| ||| ||| ||||||||||||||||    
T  10906754 gcagttataggattcctcgtcattactctttgtcaaccgtttatatcaccacctta 10906699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 9191065 - 9191181
Alignment:
Q  61 tttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgct 160  Q
    |||| ||||||| | |||| || |||||||||| |||| | || |||| ||||| | | | |||||||||| ||| |||||||||||| ||||| ||| |    
T  9191065 tttctcatcgtatttatttattcacatatatattatatcaatcatcatcactctttatcacagttataggattcctcatcattactctctatcaaccgtt 9191164  T
Q  161 tatatcaccaccttatc 177  Q
    |||||||||||||||||    
T  9191165 tatatcaccaccttatc 9191181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 22614857 - 22614701
Alignment:
Q  21 acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta 120  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |    
T  22614857 acatcgtcattctcttcattattataatataacctcatcatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcactctctgtca 22614758  T
Q  121 tagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 177  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  22614757 tagttataggactcctcatcaatactctctatcatccgcttatatcaccaccttatc 22614701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 11655474 - 11655631
Alignment:
Q  20 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 119  Q
    |||||| |||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| || || | |||||||||     
T  11655474 gacatcgtcattctcttcattattataatataacctcatcattttccatcgtagtaatttctttacatatatataatattaatcatcgtcactctctgtc 11655573  T
Q  120 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 177  Q
    | || ||||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  11655574 acagctataggactcctcatcaatattctttatcatccgcttatatcaccaccttatc 11655631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 20025970 - 20026200
Alignment:
Q  20 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 119  Q
    |||||||||||| ||||  ||||||||||| ||  ||||||||| ||||| | |||||||||||||||||||||||||| | ||||||| ||||| |||     
T  20025970 gacatcatcattgtcattgttattataatataacatcatcatttgccatcatggtaatttctttacatatatataatatgaatcgtcatcactctttgtc 20026069  T
Q  120 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 219  Q
    |||||| ||||||||| | |||||| ||| ||||||  | ||||||||| ||||||||   || ||| || |||||||||||||||||||||  | |  |    
T  20026070 atagttgtaggactcctcttcattattctctatcatatgtttatatcacaaccttatctcttcattaatcaacaccttacgcgtgactcatttgacgtca 20026169  T
Q  220 acatccatttattttattttagtattcatct 250  Q
    |||||| |||||| ||||||| |||||||||    
T  20026170 acatccctttattctattttattattcatct 20026200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 13477596 - 13477489
Alignment:
Q  34 catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatata------tataatattactcgtcattactctctgttatagttat 127  Q
    |||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||||      |||||||||| ||||||| ||||| ||||| ||||||    
T  13477596 catcattattataatataacatcatcctttcccatcgtagtaatttctttacatatatatatatataatattaatcgtcatcactctttgttacagttat 13477497  T
Q  128 aggactcc 135  Q
    ||||||||    
T  13477496 aggactcc 13477489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 4531820 - 4531649
Alignment:
Q  76 atttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccacctta 175  Q
    |||| |||||||||||||||||| | | ||||| |||||  || | | |||| ||| ||| |||||||||||| ||||| ||| ||||||||||||||||    
T  4531820 atttatttacatatatataatatcaattgtcatcactcttcgtcaca-ttat-ggattcctcatcattactctctatcaaccgtttatatcaccacctta 4531723  T
Q  176 tcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttattttattttagtattcat 248  Q
    ||   || ||| ||||  |||||| ||||||||| || || || |||| || | |||||||||||| |||||||    
T  4531722 tctcttcattaatccaacccttacacgtgactcatttatacgccaacacccctctattttattttattattcat 4531649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 24832161 - 24831922
Alignment:
Q  20 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatat------ataatattactcgtcattactc 113  Q
    |||||| |||||||||||| ||||||| || || ||||||||||| ||||||||||||||||||||||||||      ||||||||| || |||| ||||    
T  24832161 gacatcgtcattctcatcaatattatagtataacctcatcatttctcatcgtagtaatttctttacatatatgtatatataatattaatcatcatcactc 24832062  T
Q  114 tctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct 213  Q
    | ||| | | |||||||||||| |||||||||||| ||||||||||||| ||||||| | ||||   || ||| || || ||||||||||||||||||||    
T  24832061 tttgtcacaattataggactcctcatcattactctctatcatccgcttacatcaccatcgtatctcttcattagtcaactccttacgcgtgactcattct 24831962  T
Q  214 atgctaacatccatttattttattttagtattcatctcac 253  Q
    | || ||||||| |||||||||||||| ||||||||||||    
T  24831961 acgccaacatccctttattttattttattattcatctcac 24831922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 171
Target Start/End: Original strand, 13935715 - 13935849
Alignment:
Q  36 tcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactcc 135  Q
    |||||||||||||| ||  |||| |||||| |||||| | |||  |||||||| ||||| ||| | | ||||| ||||| ||| |  ||||||||| |||    
T  13935715 tcattattataatataacatcattatttcc-atcgtatttattcatttacatagatatagtatcaattgtcatcactctttgtcaccgttataggattcc 13935813  T
Q  136 ccatcattactctttatcatccgcttatatcaccac 171  Q
      ||||||||||| ||||| ||| ||||||||||||    
T  13935814 taatcattactctctatcaaccgtttatatcaccac 13935849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 14481761 - 14481522
Alignment:
Q  20 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatata------atattactcgtcattactc 113  Q
    |||||| |||| ||||||| ||||||| || || |||||||| ||||||||||||||||||||||||||||||||      |||||| || |||| ||||    
T  14481761 gacatcgtcatcctcatcaatattatagtataacctcatcatgtcccatcgtagtaatttctttacatatatatatatataatattaatcatcatcactc 14481662  T
Q  114 tctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct 213  Q
    | ||| | |||||||||||||| |||||||||||| ||||||||||||| |||||||   ||||   || ||| ||||| ||||||||||||||||||||    
T  14481661 tttgtcacagttataggactcctcatcattactctctatcatccgcttacatcaccattgtatctcttcattaatccactccttacgcgtgactcattct 14481562  T
Q  214 atgctaacatccatttattttattttagtattcatctcac 253  Q
    | || ||||||| |||||||||||||| ||||||||||||    
T  14481561 acgccaacatccctttattttattttattattcatctcac 14481522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 86 - 253
Target Start/End: Original strand, 17790941 - 17791108
Alignment:
Q  86 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt 185  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || |||||||||   || ||    
T  17790941 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 17791040  T
Q  186 attccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcac 253  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||  || |||||| |||||    
T  17791041 aatccacactttactcgtggctcattctacgctgacatccctttactttatcgtattattcacctcac 17791108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 86 - 253
Target Start/End: Original strand, 19099381 - 19099548
Alignment:
Q  86 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt 185  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || |||||||||   || ||    
T  19099381 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 19099480  T
Q  186 attccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcac 253  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||  || |||||| |||||    
T  19099481 aatccacactttactcgtggctcattctacgctgacatccctttactttatcgtattattcacctcac 19099548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 22159871 - 22159931
Alignment:
Q  110 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 170  Q
    ||||| ||| |||||||||||| ||| |||||||||||| ||||| ||| |||||||||||    
T  22159871 actctttgtcatagttataggattcctcatcattactctctatcaaccgtttatatcacca 22159931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 21975275 - 21975335
Alignment:
Q  110 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 170  Q
    ||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| |||||||||||    
T  21975275 actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca 21975335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 21997706 - 21997766
Alignment:
Q  110 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 170  Q
    ||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| |||||||||||    
T  21997706 actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca 21997766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 248
Target Start/End: Complemental strand, 44586574 - 44586360
Alignment:
Q  33 tcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggac 132  Q
    |||| |||||||||||  ||  ||||||||||  ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||| || ||| |||     
T  44586574 tcattattattataatttaacatcatcatttcatatcgtagtaatttctttacatatatataatactaatcgtcatcactctttgttacag-tat-ggat 44586477  T
Q  133 tccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttat 231  Q
    ||| |||||||||||| ||||| ||| ||||||||||||||||||   |  ||| ||||  |||||||| ||||||| |||||||  ||||||| | |||    
T  44586476 tcctcatcattactctctatcaaccgtttatatcaccaccttatctctttattaatccaacccttacgcatgactcatttctatgtcaacatccctctat 44586377  T
Q  232 tttattttagtattcat 248  Q
    ||||||| | |||||||    
T  44586376 tttatttcattattcat 44586360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 253
Target Start/End: Original strand, 24786268 - 24786377
Alignment:
Q  144 actctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttattttattttagta 243  Q
    ||||| |||||| || |||||||  |||||| || | || ||| || | |||||||| |||||| |||||| |  ||||||| |||||||||||||| ||    
T  24786268 actctctatcattcgtttatatcttcaccttctcttttcattaatctataccttacgtgtgacttattctacgtcaacatccctttattttattttatta 24786367  T
Q  244 ttcatctcac 253  Q
    ||||||||||    
T  24786368 ttcatctcac 24786377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 16862347 - 16862432
Alignment:
Q  86 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccac 171  Q
    ||||||||||||||| || ||   || || |||| ||||||||||| ||| |||||||| ||||||||| ||| |||||| |||||    
T  16862347 atatatataatattaatcatcgacaccctttgttgtagttataggattcctcatcattagtctttatcaaccgtttatattaccac 16862432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 1389 - 1545
Alignment:
Q  20 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 119  Q
    |||||| ||||||||||||||||||||||| || |||||||||| |||| || ||||||| ||| || ||||| ||||||| | ||||| ||||||| |     
T  1389 gacatcgtcattctcatcattattataatataacctcatcattttccattgttgtaatttatttccacatata-aatattaatagtcatcactctctttc 1487  T
Q  120 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 177  Q
    |  ||||||||||||| ||| | |||||| |||||||||| ||| ||| ||| |||||    
T  1488 acggttataggactcctcataaatactctatatcatccgcatatgtcatcacattatc 1545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 1567154 - 1567041
Alignment:
Q  58 tcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatcc 157  Q
    ||||||| ||||||| | |||| |||||||||||||||||| | ||||||| ||||| ||| | | ||||| || ||| ||| ||||| || ||||  ||    
T  1567154 tcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattattaccctctatccacc 1567055  T
Q  158 gcttatatcaccac 171  Q
    | ||||||||||||    
T  1567054 gtttatatcaccac 1567041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University