View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_171 (Length: 257)
Name: NF1408_low_171
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_171 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 31183064 - 31182823
Alignment:
| Q |
16 |
atcattctcagacacaagaaaggaataccaattggtattgttattgagttcatttggaattctaccatgaagtttatttttagttaattcaaagacactg |
115 |
Q |
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| T |
31183064 |
atcattctcagacacaagaaaggaataccaattggtgttgttattgagttcatttggaattctaccatgaagtttatttttagttaattcaaagacactg |
31182965 |
T |
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| Q |
116 |
agcagcttcaaatttccaattgtagctggaattgttccagtgagattgttttcttggagactaaggattaccaaattgatcaaatttcctatagaggcag |
215 |
Q |
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| T |
31182964 |
agcagcttcaaatttccaattgtagctggaattgttccagtgagattgttttcttggagactaaggattaccaaattgatcaaatttcctatagaggcag |
31182865 |
T |
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| Q |
216 |
gaattgatccagaaaaatgattgaatcccaaaatcaaatatt |
257 |
Q |
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| T |
31182864 |
gaattgatccagaaaaatgattgaatcccaaaatcaaatatt |
31182823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 31057549 - 31057323
Alignment:
| Q |
4 |
atgtccaataatatcattctcagacacaagaaaggaataccaattggtattgttattgagttcatttggaattctaccatgaagtttatttttagttaat |
103 |
Q |
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| T |
31057549 |
atgtccaacaaaatcattttcggacacaacaaaggaaatccaattggttatgttataaagaccatttggaattctaccatgaagtttattggtagctact |
31057450 |
T |
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| Q |
104 |
tcaaagacactgagcagcttcaaatttccaattgtagctggaattgttccagtgagattgttttcttggagactaaggattaccaaattgatcaaatttc |
203 |
Q |
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| T |
31057449 |
tcaaaaacagtgagccacttcaaatttccaattgaagctggaatagttccagtgagattgttttcttggacactgaggacttgcaaattgatcaaatttc |
31057350 |
T |
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| Q |
204 |
ctatagaggcaggaattgatccagaaa |
230 |
Q |
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| T |
31057349 |
ctatagaggcaggaattggtccagaaa |
31057323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 31101972 - 31101758
Alignment:
| Q |
16 |
atcattctcagacacaagaaaggaataccaattggtattgttattgagttcatttggaattctaccatgaagtttatttttagttaattcaaagacactg |
115 |
Q |
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|||||| || ||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||| || || || |||||||||| || |
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| T |
31101972 |
atcattttcggacacaacaaaggaataccaattggtaatgttataaagtccatttggaattctaccataaagtttgttggaagctacttcaaagacaatg |
31101873 |
T |
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| Q |
116 |
agcagcttcaaatttccaattgtagctggaattgttccagtgagattgttttcttggagactaaggattaccaaattgatcaaatttcctatagaggcag |
215 |
Q |
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||| ||||||||||||| |||||||||||||| ||||| |||||||||||| |||||| ||||| | | ||||||||||||||||||||||||||||| |
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| T |
31101872 |
agctgcttcaaatttccgattgtagctggaatagttcctgtgagattgtttacttggacactaaagtatttcaaattgatcaaatttcctatagaggcag |
31101773 |
T |
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| Q |
216 |
gaattgatccagaaa |
230 |
Q |
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| T |
31101772 |
gaattgatccagaaa |
31101758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 31139339 - 31139140
Alignment:
| Q |
26 |
gacacaagaaaggaataccaattggtattgttattgagttcatttggaattctaccatgaagtttatttttagttaattcaaagacactgagcagcttca |
125 |
Q |
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||||||| ||||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||| || || |||||||||| ||||| | |||| |
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| T |
31139339 |
gacacaataaaggaaaaccaattggttatgttataaagtccatttggaattctaccatgaagtttattggcagctacttcaaagacagtgagccgattca |
31139240 |
T |
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| Q |
126 |
aatttccaattgtagctggaattgttccagtgagattgttttcttggagact-aaggattaccaaattgatcaaatttcctatagaggcaggaattgatc |
224 |
Q |
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| T |
31139239 |
aatttccaattgtagttggaatagttcctgtgagattgttttcttggacactaaaggaat-ccaaattgatcaaatttcctatagtggcaggaattgatc |
31139141 |
T |
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