View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_172 (Length: 257)
Name: NF1408_low_172
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_172 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 31183072 - 31182823
Alignment:
| Q |
8 |
ccaacaatatcattctcagacacaagaaaggaataccaattggtattgttattgagttcatttggaattctaccatgaagtttatttttagttaattcaa |
107 |
Q |
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| T |
31183072 |
ccaacaaaatcattctcagacacaagaaaggaataccaattggtgttgttattgagttcatttggaattctaccatgaagtttatttttagttaattcaa |
31182973 |
T |
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| Q |
108 |
agacactgagcagcttcaaatttccaattgtagctggaattgttccagtgagattgttttcttggagactaaggattaccaaattgatcaaatttcctat |
207 |
Q |
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| T |
31182972 |
agacactgagcagcttcaaatttccaattgtagctggaattgttccagtgagattgttttcttggagactaaggattaccaaattgatcaaatttcctat |
31182873 |
T |
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| Q |
208 |
agaggcaggaattgatccagaaaaatgattgaatcccaaaatcaaatatt |
257 |
Q |
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| T |
31182872 |
agaggcaggaattgatccagaaaaatgattgaatcccaaaatcaaatatt |
31182823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 31101980 - 31101758
Alignment:
| Q |
8 |
ccaacaatatcattctcagacacaagaaaggaataccaattggtattgttattgagttcatttggaattctaccatgaagtttatttttagttaattcaa |
107 |
Q |
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| T |
31101980 |
ccaacaaaatcattttcggacacaacaaaggaataccaattggtaatgttataaagtccatttggaattctaccataaagtttgttggaagctacttcaa |
31101881 |
T |
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| Q |
108 |
agacactgagcagcttcaaatttccaattgtagctggaattgttccagtgagattgttttcttggagactaaggattaccaaattgatcaaatttcctat |
207 |
Q |
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| T |
31101880 |
agacaatgagctgcttcaaatttccgattgtagctggaatagttcctgtgagattgtttacttggacactaaagtatttcaaattgatcaaatttcctat |
31101781 |
T |
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| Q |
208 |
agaggcaggaattgatccagaaa |
230 |
Q |
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| T |
31101780 |
agaggcaggaattgatccagaaa |
31101758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 31057546 - 31057323
Alignment:
| Q |
7 |
tccaacaatatcattctcagacacaagaaaggaataccaattggtattgttattgagttcatttggaattctaccatgaagtttatttttagttaattca |
106 |
Q |
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|||||||| |||||| || ||||||| ||||||| ||||||||| |||||| || |||||||||||||||||||||||||||| ||| || |||| |
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| T |
31057546 |
tccaacaaaatcattttcggacacaacaaaggaaatccaattggttatgttataaagaccatttggaattctaccatgaagtttattggtagctacttca |
31057447 |
T |
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| Q |
107 |
aagacactgagcagcttcaaatttccaattgtagctggaattgttccagtgagattgttttcttggagactaaggattaccaaattgatcaaatttccta |
206 |
Q |
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|| ||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||| |
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| T |
31057446 |
aaaacagtgagccacttcaaatttccaattgaagctggaatagttccagtgagattgttttcttggacactgaggacttgcaaattgatcaaatttccta |
31057347 |
T |
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| Q |
207 |
tagaggcaggaattgatccagaaa |
230 |
Q |
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| T |
31057346 |
tagaggcaggaattggtccagaaa |
31057323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 31139357 - 31139140
Alignment:
| Q |
8 |
ccaacaatatcattctcagacacaagaaaggaataccaattggtattgttattgagttcatttggaattctaccatgaagtttatttttagttaattcaa |
107 |
Q |
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||||||| |||||| | ||||||| ||||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||| || || ||||| |
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| T |
31139357 |
ccaacaaaatcatttttggacacaataaaggaaaaccaattggttatgttataaagtccatttggaattctaccatgaagtttattggcagctacttcaa |
31139258 |
T |
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| Q |
108 |
agacactgagcagcttcaaatttccaattgtagctggaattgttccagtgagattgttttcttggagact-aaggattaccaaattgatcaaatttccta |
206 |
Q |
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| T |
31139257 |
agacagtgagccgattcaaatttccaattgtagttggaatagttcctgtgagattgttttcttggacactaaaggaat-ccaaattgatcaaatttccta |
31139159 |
T |
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| Q |
207 |
tagaggcaggaattgatcc |
225 |
Q |
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||| ||||||||||||||| |
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| T |
31139158 |
tagtggcaggaattgatcc |
31139140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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