View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_182 (Length: 251)

Name: NF1408_low_182
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_182
NF1408_low_182
[»] chr4 (2 HSPs)
chr4 (13-251)||(35767165-35767421)
chr4 (139-213)||(19359358-19359432)
[»] chr7 (5 HSPs)
chr7 (13-108)||(20496097-20496191)
chr7 (165-247)||(20495938-20496020)
chr7 (167-251)||(19344411-19344495)
chr7 (184-248)||(46769521-46769585)
chr7 (156-213)||(36260474-36260531)
[»] chr3 (2 HSPs)
chr3 (129-246)||(21620813-21620930)
chr3 (129-246)||(21642483-21642600)
[»] chr2 (3 HSPs)
chr2 (129-246)||(2596159-2596276)
chr2 (191-247)||(2581469-2581525)
chr2 (129-246)||(2589084-2589201)
[»] chr8 (1 HSPs)
chr8 (129-246)||(29157200-29157317)
[»] chr6 (1 HSPs)
chr6 (191-245)||(30399276-30399330)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 35767421 - 35767165
Alignment:
Q  13 aatatcaaccaaaaccatcaaatagaaaagagtgacgctatctattaagcaatgtacatgaattgacacaaattcaaaaagtataacgtctaggagagac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  35767421 aatatcaaccaaaaccatcaaatagaaaagagtgacgctatctattaagcaatgtacatgaattgacacaaattcaaaaagtataccgtctaggagacac 35767322  T
Q  113 tctcaaaatgtcagagaaacc------------------ttggtagagaaccagtgtattctatcagtagttctagttcgcactgctccattatctctca 194  Q
    |||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35767321 tctcaaaatgtcagagaaaccaagctttcgacataaaccttggtagagaaccagtgtattctatcagtagttctagttcgcactgctccattatctctca 35767222  T
Q  195 aattatatagaattgcttgttcttcttccttgttagccaatattagtgtatcaccat 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35767221 aattatatagaattgcttgttcttcttccttgttagccaatattagtgtatcaccat 35767165  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 19359432 - 19359358
Alignment:
Q  139 agagaaccagtgtattctatcagtagttctagttcgcactgctccattatctctcaaattatatagaattgcttg 213  Q
    ||||||||| | |||| |||||||| |||||||| |||| |||| |||||||||||| || |||| |||| ||||    
T  19359432 agagaaccattttattttatcagtaattctagtttgcaccgctctattatctctcaagttttatataattacttg 19359358  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 20496191 - 20496097
Alignment:
Q  13 aatatcaaccaaaaccatcaaatagaaaagagtgacgctatctattaagcaatgtacatgaattgacacaaattcaaaaagtataacgtctaggag 108  Q
    |||||||||||||||||||| |||||||||| ||  ||  ||||||| | || |||||||||||||||||||||||||||||| |  |||||||||    
T  20496191 aatatcaaccaaaaccatcacatagaaaagattgttgccgtctatta-gaaaagtacatgaattgacacaaattcaaaaagtaaattgtctaggag 20496097  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 20496020 - 20495938
Alignment:
Q  165 ttctagttcgcactgctccattatctctcaaattatatagaattgcttgttcttcttccttgttagccaatattagtgtatca 247  Q
    |||||||||||||||| |  || |||||||| |||||||||||||||||   ||||| ||||||||||||||| |||||||||    
T  20496020 ttctagttcgcactgcactgttgtctctcaagttatatagaattgcttgccgttcttgcttgttagccaatatcagtgtatca 20495938  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 19344411 - 19344495
Alignment:
Q  167 ctagttcgcactgctccattatctctcaaattatatagaattgcttgttcttcttccttgttagccaatattagtgtatcaccat 251  Q
    ||||||||| |||||| ||| |||||||||||||| ||||||||||| |||| |    |||| |||||||  |||||||||||||    
T  19344411 ctagttcgctctgctctattgtctctcaaattatagagaattgcttggtcttttatagtgtttgccaatagcagtgtatcaccat 19344495  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 46769585 - 46769521
Alignment:
Q  184 attatctctcaaattatatagaattgcttgttcttcttccttgttagccaatattagtgtatcac 248  Q
    |||||| ||||||||||||||||||||| | | |||||  ||||| ||||||||| |||||||||    
T  46769585 attatccctcaaattatatagaattgctcgctgttcttgattgttggccaatattcgtgtatcac 46769521  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 36260531 - 36260474
Alignment:
Q  156 tatcagtagttctagttcgcactgctccattatctctcaaattatatagaattgcttg 213  Q
    |||| ||| |||||||| |||| |||  |||||||||||| |||||||||||||||||    
T  36260531 tatcggtaattctagtttgcaccgctatattatctctcaagttatatagaattgcttg 36260474  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 246
Target Start/End: Original strand, 21620813 - 21620930
Alignment:
Q  129 aaaccttggtagagaaccagtgtattctatcagtagttctagttcgcactgctccattatctctcaaattatatagaattgcttgttcttcttccttgtt 228  Q
    ||||||||| ||||||||| ||||||  |||  || ||||||| |||  ||||  |||||  ||||||||||||||||||||| ||| |||||  || ||    
T  21620813 aaaccttggcagagaaccattgtatttcatcgataattctagtccgctttgctgtattattcctcaaattatatagaattgctcgttgttcttgattatt 21620912  T
Q  229 agccaatattagtgtatc 246  Q
    ||||||||||||||||||    
T  21620913 agccaatattagtgtatc 21620930  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 246
Target Start/End: Original strand, 21642483 - 21642600
Alignment:
Q  129 aaaccttggtagagaaccagtgtattctatcagtagttctagttcgcactgctccattatctctcaaattatatagaattgcttgttcttcttccttgtt 228  Q
    ||||||||| ||||||||| ||||||  |||  || ||||||| |||  ||||  |||||  ||||||||||||||||||||| ||| |||||  || ||    
T  21642483 aaaccttggcagagaaccattgtatttcatcgataattctagtccgctttgctgtattattcctcaaattatatagaattgctcgttgttcttgattatt 21642582  T
Q  229 agccaatattagtgtatc 246  Q
    ||||||||||||||||||    
T  21642583 agccaatattagtgtatc 21642600  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 2596276 - 2596159
Alignment:
Q  129 aaaccttggtagagaaccagtgtattctatcagtagttctagttcgcactgctccattatctctcaaattatatagaattgcttgttcttcttccttgtt 228  Q
    ||||||||| ||||||||| ||||||  |||  || ||||||| |||  ||||  |||||  ||||||||||||||||||||| ||| |||||  || ||    
T  2596276 aaaccttggcagagaaccattgtatttcatcgataattctagtccgctttgctgtattattcctcaaattatatagaattgctcgttgttcttgattatt 2596177  T
Q  229 agccaatattagtgtatc 246  Q
    ||||||||||||||||||    
T  2596176 agccaatattagtgtatc 2596159  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 2581525 - 2581469
Alignment:
Q  191 ctcaaattatatagaattgcttgttcttcttccttgttagccaatattagtgtatca 247  Q
    ||||||||||||||||||||| ||| |||||  || |||||||||||||||||||||    
T  2581525 ctcaaattatatagaattgctcgttgttcttgattattagccaatattagtgtatca 2581469  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 2589201 - 2589084
Alignment:
Q  129 aaaccttggtagagaaccagtgtattctatcagtagttctagttcgcactgctccattatctctcaaattatatagaattgcttgttcttcttccttgtt 228  Q
    ||||||||||||||||||| ||||||  ||   || ||||||| |||  ||||   ||||  |||||||||| |||||||||| ||| |||||  || ||    
T  2589201 aaaccttggtagagaaccattgtatttcattgataattctagtccgctttgctgttttattcctcaaattatgtagaattgctcgttgttcttgattatt 2589102  T
Q  229 agccaatattagtgtatc 246  Q
    ||||||||||||||||||    
T  2589101 agccaatattagtgtatc 2589084  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 29157317 - 29157200
Alignment:
Q  129 aaaccttggtagagaaccagtgtattctatcagtagttctagttcgcactgctccattatctctcaaattatatagaattgcttgttcttcttccttgtt 228  Q
    ||||||||| ||||||||| ||||||  |||  || ||||||| | |  ||||  |||||| ||||||||||||||||||||  ||| |||||  || ||    
T  29157317 aaaccttggcagagaaccattgtattggatcgataattctagtcctctttgctgtattatccctcaaattatatagaattgcccgttgttcttgattatt 29157218  T
Q  229 agccaatattagtgtatc 246  Q
    ||||||||||||||||||    
T  29157217 agccaatattagtgtatc 29157200  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 30399330 - 30399276
Alignment:
Q  191 ctcaaattatatagaattgcttgttcttcttccttgttagccaatattagtgtat 245  Q
    ||||||||||||||||||||| ||| |||||  || |||||||||||||||||||    
T  30399330 ctcaaattatatagaattgctcgttgttcttgattattagccaatattagtgtat 30399276  T

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