View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_184 (Length: 251)
Name: NF1408_low_184
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_184 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 36689555 - 36689309
Alignment:
| Q |
1 |
attgacatatatatatttgatttgataagagtttcagaacttgtcctttggttggtttgtgagattcttatctcatatctctgagtttctaagcttcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36689555 |
attgacatatatatatttgatttgataagagtttcagaacttgtcctttggttggtttgtgagattcttatctcatatctctgagtttctaagcttcatt |
36689456 |
T |
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| Q |
101 |
catcacactctcttgttcaattttgcaatggtacgatgatgtttttaatatttaagaggtttcatatttcaacaac--nnnnnnnnnnnnnnngaagaaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36689455 |
catcacactctcttgttcaattttgcaatggtacgatgatgtttttaatatttaagaggtttcatatttcaacaactttttttttttttttttgaagaaa |
36689356 |
T |
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| Q |
199 |
ctttttcttttcttcttaacttgcatttcttatgctagtataattta |
245 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
36689355 |
ctttttcttttcttcttaacttgcatttcttatgctattagaattta |
36689309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 442278 - 442042
Alignment:
| Q |
7 |
atatatatatttgatttgataagagtttcagaacttgtcctttggttggtttgtgagattcttatctcatatctctgagtttctaagcttcattcatcac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
442278 |
atatatatatttgatttgataagagtttcagaacttgtcctttggttggtttgtgagattcttatctcatatctctgagtttctaagcttcattcatcac |
442179 |
T |
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| Q |
107 |
actctcttgttcaattttgcaatggtacgatgatgttttt-aatatttaagaggtttcatatttcaacaacnnnnnnnnnnnnnnngaagaaactttttc |
205 |
Q |
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| T |
442178 |
actctcttgttcaattttccaaaggtacgatgatgtttttaaatatttaagaggtttcatatttcaacaac---ttttttttttttgaagaaactttttc |
442082 |
T |
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| Q |
206 |
ttttcttcttaacttgcatttcttatgctagtataattta |
245 |
Q |
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| T |
442081 |
ttttcttcttaacttgcatttcttatgctattagaattta |
442042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 404470 - 404300
Alignment:
| Q |
11 |
atatatttgatttgataagagtttcagaacttgtcctttggttggtttgtgagattcttatctcatatctctgagtttctaagcttcattca----tcac |
106 |
Q |
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|||||||||||||||||||| ||||||||| |||| | |||| |||||||||||||||| ||||| || |||||||||||||| || ||||| |||| |
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| T |
404470 |
atatatttgatttgataagattttcagaacctgtcttgtggtgggtttgtgagattcttgtctcacat-tctgagtttctaagatttattcatcactcac |
404372 |
T |
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| Q |
107 |
actctcttgttcaattttgcaatggtacgatgatgtttttaatatt--taagaggtttcatatttcaacaac |
176 |
Q |
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||||||||||||| | |||||| ||||||||||||||| ||||||| |||||||||||| ||||||||||| |
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| T |
404371 |
actctcttgttcattgttgcaaaggtacgatgatgtttgtaatatttataagaggtttcacatttcaacaac |
404300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 429471 - 429301
Alignment:
| Q |
11 |
atatatttgatttgataagagtttcagaacttgtcctttggttggtttgtgagattcttatctcatatctctgagtttctaagcttcattca----tcac |
106 |
Q |
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|||||||||||||||||||| ||||||||| |||| | |||| |||||||||||||||| ||||| || |||||||||||||| || ||||| |||| |
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| T |
429471 |
atatatttgatttgataagattttcagaacctgtcttgtggtgggtttgtgagattcttgtctcacat-tctgagtttctaagatttattcatcactcac |
429373 |
T |
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| Q |
107 |
actctcttgttcaattttgcaatggtacgatgatgtttttaatatt--taagaggtttcatatttcaacaac |
176 |
Q |
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||||||||||||| | |||||| ||||||||||||||| ||||||| |||||||||||| ||||||||||| |
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| T |
429372 |
actctcttgttcattgttgcaaaggtacgatgatgtttgtaatatttataagaggtttcacatttcaacaac |
429301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 1079 - 1249
Alignment:
| Q |
11 |
atatatttgatttgataagagtttcagaacttgtcctttggttggtttgtgagattcttatctcatatctctgagtttctaagcttcattca----tcac |
106 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||| | |||| |||||||||||||||| ||||| || |||||||||||||| || ||||| |||| |
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| T |
1079 |
atatatttgatttgataagattttcagaacctgtcttgtggtgggtttgtgagattcttgtctcacat-tctgagtttctaagatttattcatcactcac |
1177 |
T |
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| Q |
107 |
actctcttgttcaattttgcaatggtacgatgatgtttttaatatt--taagaggtttcatatttcaacaac |
176 |
Q |
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||||||||||||| | |||||| ||||||||||||||| ||||||| |||||||||||| ||||||||||| |
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| T |
1178 |
actctcttgttcattgttgcaaaggtacgatgatgtttgtaatatttataagaggtttcacatttcaacaac |
1249 |
T |
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