View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_19 (Length: 521)
Name: NF1408_low_19
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_19 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 48716764 - 48716996
Alignment:
| Q |
30 |
taatgtgcataaataaaacaatactatatcatatataagtttattttctaccattgcatcaataaacttcgttatatcatttaataatataacttagcaa |
129 |
Q |
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| T |
48716764 |
taatgtgcataactaaaacaatactatatcatatataagtttattttctaccatggcatcaataaacttcgttatatcatttaataatataacttagcaa |
48716863 |
T |
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| Q |
130 |
tccattaaaaaacaatcttgtgagaggtgcaagatatatgtgccgtgtgcaccatacaccataaactttgggttgcacttgagtgacatataatatttgg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
48716864 |
tccattaaaaaacaatcttgtgagaggtgcaagatatatgtgccgtgtgcaccatacaccataaactttgggttgcacttgagtgacatatagcacttgg |
48716963 |
T |
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| Q |
230 |
tgacattggtcaaccataatatcacaagtgtat |
262 |
Q |
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| T |
48716964 |
tgacattggtcaaccataatatcacaagcgtat |
48716996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 350 - 515
Target Start/End: Original strand, 48717903 - 48718068
Alignment:
| Q |
350 |
acaaaatgtgtacaaaatggagcggtcaacatatgattttccatttggcatctactaaaccaatgtttgttctttactacagaannnnnnnn--gtttta |
447 |
Q |
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| T |
48717903 |
acaaagtgtgtacaaaatgaagcggtcaacatat-atttcccatttggcatctactaaaccaatgtttgttctttactaaagaattttttttttgtttta |
48718001 |
T |
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| Q |
448 |
gtttggattaacatctagcccataaaagcaccttaattaaaataaatttataaacacattcatctcac |
515 |
Q |
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| T |
48718002 |
gtttggattaacatctggcccataaa-gcaccttaattaaaataaatttataaacacattcatctcac |
48718068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 48717030 - 48717073
Alignment:
| Q |
296 |
agaagaaagccatttgtaagattgtggtcggtcaatgtcatcaa |
339 |
Q |
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| T |
48717030 |
agaagaaagccacttgtaagattgtggtcggtcaatatcatcaa |
48717073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 17547091 - 17547053
Alignment:
| Q |
224 |
atttggtgacattggtcaaccataatatcacaagtgtat |
262 |
Q |
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| T |
17547091 |
atttggtgacattggtcaaccataatgtcacaagtgtat |
17547053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 26524 - 26560
Alignment:
| Q |
226 |
ttggtgacattggtcaaccataatatcacaagtgtat |
262 |
Q |
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| T |
26524 |
ttggtgacattggtcaaacacaatatcacaagtgtat |
26560 |
T |
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