View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_195 (Length: 248)

Name: NF1408_low_195
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_195
NF1408_low_195
[»] chr7 (5 HSPs)
chr7 (9-234)||(46131967-46132192)
chr7 (146-234)||(46705244-46705332)
chr7 (9-89)||(46126336-46126416)
chr7 (89-135)||(46126452-46126498)
chr7 (54-89)||(46705110-46705145)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 46131967 - 46132192
Alignment:
Q  9 agcagagacgcggatatgctgggactttgtctgactgggctgtataacattttaaaggcaggagaaatttacaaggataagattaaagagtgtgcaggat 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46131967 agcacagacgcggatatgctgggactttgtctgactgggctgtataacattttaaaggcaggagaaattaacaaggataagattaaagagtgtgcaggat 46132066  T
Q  109 tggataagattaaaagattgcaaagctgtaacatggcggtgtacattttgaagacatattttcctgaggaccttgaagctatagctgaagagaaaccgta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46132067 tggataagattaaaagattgcaaagctgtaacatggcggtgtacattttgaagacatattttcctgaggaccttgaagctatagctgaagagaaaccgta 46132166  T
Q  209 gatgactaggtttccatgttattcct 234  Q
    ||||||||||||||||||||||||||    
T  46132167 gatgactaggtttccatgttattcct 46132192  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 46705244 - 46705332
Alignment:
Q  146 ggtgtacattttgaagacatattttcctgaggaccttgaagctatagctgaagagaaaccgtagatgactaggtttccatgttattcct 234  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46705244 ggtgtacattttggagacatattttcctggggaccttgaagctatagctcaagagaaaccgtagatgactaggtttccatgttattcct 46705332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 46126336 - 46126416
Alignment:
Q  9 agcagagacgcggatatgctgggactttgtctgactgggctgtataacattttaaaggcaggagaaatttacaaggataag 89  Q
    |||| |||||||  |||||||  ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||    
T  46126336 agcacagacgcgactatgctgacactttgtctgactgggctgaaaaacattttaaaggcaggagaaattaacaaggataag 46126416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 46126452 - 46126498
Alignment:
Q  89 gattaaagagtgtgcaggattggataagattaaaagattgcaaagct 135  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||||    
T  46126452 gattgaagagtgtgcaggattggataagattgcaagattgcaaagct 46126498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 46705110 - 46705145
Alignment:
Q  54 aacattttaaaggcaggagaaatttacaaggataag 89  Q
    |||||||||||||||||||||||| |||||||||||    
T  46705110 aacattttaaaggcaggagaaattaacaaggataag 46705145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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