View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_198 (Length: 242)
Name: NF1408_low_198
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_198 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 39245502 - 39245693
Alignment:
| Q |
1 |
ggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaagtataatcta-----cccaccaat |
95 |
Q |
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| T |
39245502 |
ggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccaccaat |
39245601 |
T |
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| Q |
96 |
tgtaaaaggaaagtttttgagacttctctttcggctcaaactcatcaaattggtcggctccaagtgtggtgatgctgggcttaattccccct |
187 |
Q |
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| T |
39245602 |
tgtaaaaggaaagtttttgagacttctctttcggctcaaactcatcaaattggtcggctccaagtgtggtgatgctgggcttaattccccct |
39245693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 39251506 - 39251695
Alignment:
| Q |
1 |
ggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaagtataatcta-----cccaccaat |
95 |
Q |
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| T |
39251506 |
ggaatcccataaccaagggcaaa-ccaacattgtcttgtatgtagactaatcctgtttcggctaaaatgcctccagttataatgcagaacacccaccaat |
39251604 |
T |
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| Q |
96 |
tgtaaaaggaaagtttttgagacttctctttcggctcaaactcatcaaattggtcggctccaagtgtggtgatgctgggcttaattccccc |
186 |
Q |
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| T |
39251605 |
tgaaaaaggaaagtttttgggacctctctttaggctcaaactcatcaaattggtcggctccaggtgtggagatgttgggcttaatcccccc |
39251695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 39261098 - 39261289
Alignment:
| Q |
1 |
ggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaagtataatcta-----cccaccaat |
95 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||| ||| |||||| ||||| || ||| || ||||||||| |
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| T |
39261098 |
ggaatcccatagccaagggcaaaaccaacattgtcttgtatgtaaaccaatattgtttgagctgaaatggttccaattaaaatgtaaaacacccaccaat |
39261197 |
T |
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| Q |
96 |
tgtaaaaggaaagtttttgagacttctctttcggctcaaactcatcaaattggtcggctccaagtgtggtgatgctgggcttaattccccct |
187 |
Q |
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| T |
39261198 |
tgtagaatgaaagtttttgggacctctctttaggctcaaactcatcaaattggtctgctccaatggtggaaatgttgggcttagttccccct |
39261289 |
T |
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