View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_low_199 (Length: 240)
Name: NF1408_low_199
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_199 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 46132192 - 46131972
Alignment:
| Q |
18 |
aggaataacatggaaacctagtcatctacggtttctcttcagctatagcttcaaggtcctcaggaaaatatgtcttcaaaatgtacaccgccatgttaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46132192 |
aggaataacatggaaacctagtcatctacggtttctcttcagctatagcttcaaggtcctcaggaaaatatgtcttcaaaatgtacaccgccatgttaca |
46132093 |
T |
|
| Q |
118 |
gctttgcaatcttttaatcttatccaatcctgcacactctttaatcttatccttgtaaatttctcctgcctttaaaatgttatacagcccagtcagacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46132092 |
gctttgcaatcttttaatcttatccaatcctgcacactctttaatcttatccttgttaatttctcctgcctttaaaatgttatacagcccagtcagacaa |
46131993 |
T |
|
| Q |
218 |
agtcccagcatatccgcgtct |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46131992 |
agtcccagcatatccgcgtct |
46131972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 46705332 - 46705244
Alignment:
| Q |
18 |
aggaataacatggaaacctagtcatctacggtttctcttcagctatagcttcaaggtcctcaggaaaatatgtcttcaaaatgtacacc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
46705332 |
aggaataacatggaaacctagtcatctacggtttctcttgagctatagcttcaaggtccccaggaaaatatgtctccaaaatgtacacc |
46705244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 46126416 - 46126341
Alignment:
| Q |
163 |
cttatccttgtaaatttctcctgcctttaaaatgttatacagcccagtcagacaaagtcccagcatatccgcgtct |
238 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
46126416 |
cttatccttgttaatttctcctgcctttaaaatgtttttcagcccagtcagacaaagtgtcagcatagtcgcgtct |
46126341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 46126498 - 46126452
Alignment:
| Q |
117 |
agctttgcaatcttttaatcttatccaatcctgcacactctttaatc |
163 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
46126498 |
agctttgcaatcttgcaatcttatccaatcctgcacactcttcaatc |
46126452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 46705145 - 46705110
Alignment:
| Q |
163 |
cttatccttgtaaatttctcctgcctttaaaatgtt |
198 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46705145 |
cttatccttgttaatttctcctgcctttaaaatgtt |
46705110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University