View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_low_209 (Length: 233)
Name: NF1408_low_209
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_209 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 39793431 - 39793553
Alignment:
| Q |
102 |
ctctccctgcaacaggnnnnnnnctacttcccacaaaaatgggactgagcacaactaaagatcccaccatacgaagtggtaggttgccnnnnnnncccta |
201 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
39793431 |
ctctccctgcaacaggtttgtttctactttccacaaaaatgggactgagcacaactaaagataccatcatacgaagtggtaggttgccaagaaaaaccta |
39793530 |
T |
|
| Q |
202 |
cgattaccgccgctaagtataat |
224 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
39793531 |
caattaccgccgctaagtataat |
39793553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University