View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_214 (Length: 230)
Name: NF1408_low_214
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_214 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 41114102 - 41114315
Alignment:
| Q |
9 |
acatgacacatgatggaccgtgagtataaaatgcacgtcgaaattcgaattacatatagaaagcaactacaaaacttttttccttacttgaattcaa--- |
105 |
Q |
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| T |
41114102 |
acatgacacatgatggaccgtgagtataaaatgcacgtcgaaattcgaattacatatagaaagcaactacaaaacttttttccttacttgaattcaatat |
41114201 |
T |
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| Q |
106 |
tattattattacacaccttcaatgcatattttcttaatggagagtatatttgtttctatggtata-nnnnnnnnacttttatacttatactcgtgttctg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41114202 |
tattattattacacaccttcaatgcatattttcttaatggagagtatatttgtttctatggtatatttttttttacttttatacttatactcgtgttctg |
41114301 |
T |
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| Q |
205 |
gatttagtattcat |
218 |
Q |
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|||||||||||||| |
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| T |
41114302 |
gatttagtattcat |
41114315 |
T |
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