View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_22 (Length: 502)
Name: NF1408_low_22
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 87 - 492
Target Start/End: Complemental strand, 527568 - 527149
Alignment:
| Q |
87 |
ctgcattaggccgcagcagactatttagtcatcaaacaaattatttaatggattataatatttcatgctaataagaattaaatttaccccgcaatatgca |
186 |
Q |
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| T |
527568 |
ctgcattaggccgcaacagactatttagtcatcaaacaaattatttaatggattatagtatttgatgctaataaaaattaaatttacgccgcaatatgca |
527469 |
T |
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| Q |
187 |
tggcaactgtgatgcctgcnnnnnnnn-----------tacatgtagttagttggtcaaaattaccttgagtgaagtgcgcctgttctgaaaccaaaact |
275 |
Q |
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| T |
527468 |
tggcaacggtgatgcctgcaacaacaacaaaaaaaaaatacatgtagttagttggtcaaagttaccttcagtgaagtgcgcctgttctgaaaccaaaact |
527369 |
T |
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| Q |
276 |
tgatttgcgttgggtctaacccagtccgaaggctcagctctcttctctgagcatcattaggattaggacactgcttgaagaaactgatgac-aaaaccaa |
374 |
Q |
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| T |
527368 |
tgatttgcgttgggtctaacccagtccgaaggctcagctctcttctctgagcatcattaggattaggacactgcttgaagaagctgatgacaaaaaccaa |
527269 |
T |
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| Q |
375 |
gttcaaaaaatatggagcaaagtaaagnnnnnnnnnnnnnnngatcacatat---tcttattcaaatgaaatatataaaaatggttcctacgtatccatt |
471 |
Q |
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| T |
527268 |
gttcaaaaaatatggagc-aagtaaagatatattatatatatgatcacatattaatcttattcagatgaaatatataaaaatggttcctacgtatccatt |
527170 |
T |
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| Q |
472 |
tcatcaatttgttgctctgtg |
492 |
Q |
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| T |
527169 |
tcatcaatttgttgctgtgtg |
527149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 527602 - 527564
Alignment:
| Q |
30 |
caatgtaaatcgcattaaaaattacattgtcgtgctgca |
68 |
Q |
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| T |
527602 |
caatgtaaatcacagtaaaaattacattgtcgtgctgca |
527564 |
T |
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