View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_220 (Length: 227)
Name: NF1408_low_220
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_220 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 40188105 - 40188260
Alignment:
| Q |
1 |
ttttgtttagtttaaaggaacttgctttgttccctttagatatacatatacccttatatactaactaaggcacacaaaaaccaaagagagtttatagata |
100 |
Q |
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| T |
40188105 |
ttttgtttagtttaaaggaacttgctttgttccctttagatatacatatacccttatatactaactaaggcacacaaaaaccaaagagagtttatagata |
40188204 |
T |
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| Q |
101 |
tatttcattacattgttggttagatacttagatatggtatgattagtatattattg |
156 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
40188205 |
tatttcattacattgtttgttagatacttagatatggtatgattagtatatgattg |
40188260 |
T |
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