View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_24 (Length: 494)
Name: NF1408_low_24
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 99 - 494
Target Start/End: Original strand, 40945248 - 40945643
Alignment:
| Q |
99 |
aaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgatatcctcaatgctgacctttg |
198 |
Q |
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| T |
40945248 |
aaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgatatcctcaatgctgacctttg |
40945347 |
T |
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| Q |
199 |
tccttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaacccttcgttcctttctgtactcactctttgatctaaccaa |
298 |
Q |
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| T |
40945348 |
tccctgtcgatttgtataccgaaatttagaagtgtcatctgagattcgaatatcaggtaacccttcgttcctttgtgtactcactctttgatctaaccaa |
40945447 |
T |
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| Q |
299 |
acaacacctcttgtttgttttggtctccaccatattttgatgtattcttttcttgtattccataaatttgatgaagcagctatcccaaaaacaatgtgtt |
398 |
Q |
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| T |
40945448 |
acaacacctcttgtttgttttggtctccaccatattttgatgtattcttttcttgtattccataaatttgatgaagcagctatcccaaaaacaatgtgtt |
40945547 |
T |
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| Q |
399 |
tcagctcagtatcttgtctttgagccatttgttcaggtgttaaccgaacaacaataggtgatttattttcttgttcttctccttctccttcacgaa |
494 |
Q |
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| T |
40945548 |
tcagctcagtatcttgtctttgagccatttgttccggtgttaaccgaacaacaataggtgatttattttcttgttcttctccttctccttcacgaa |
40945643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 101 - 422
Target Start/End: Original strand, 22776636 - 22776957
Alignment:
| Q |
101 |
acagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgatatcctcaatgctgacctttgtc |
200 |
Q |
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|||||||||||||||||||||| |||||||| ||||| | ||| ||||| ||||||||||||||||||| |||||| ||||| || || || || |||| |
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| T |
22776636 |
acagtatcatcatctcccatcatgaaccatctcacatcctccaacccaagtttcaatgtctctgtcacaatccttgaaatccttaaagcagatctctgtc |
22776735 |
T |
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| Q |
201 |
cttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaacccttcgttcctttc-tgtactcactctttgatctaaccaaa |
299 |
Q |
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| T |
22776736 |
cctgacgattcgtatacttaaatctactagtgtcccccgaaatttgaatatctggtaaatcttcat-catcacgtgtcttcactctttgatccatccaca |
22776834 |
T |
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| Q |
300 |
caacacctcttgtttgttttggtctccaccatattttgatgtattcttttcttgtattccataaatttgatgaagcagctatcccaaaaacaatgtgttt |
399 |
Q |
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| T |
22776835 |
ccacccctcttgtttcattatgtttccaccataccttaatgtattcctttcttatgttccacaaatttgatgaagccgctatcccaaaaacaatgtgttt |
22776934 |
T |
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| Q |
400 |
cagctcagtatcttgtctttgag |
422 |
Q |
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| T |
22776935 |
gatctctgtgtcttgtctttgag |
22776957 |
T |
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