View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_243 (Length: 219)
Name: NF1408_low_243
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_243 |
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Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 1481042 - 1480947
Alignment:
| Q |
1 |
cttatactaaactcaagaaaggctaaaagtctgtttttcacgagctttcttatgctaaaatagaagcctcaatacacaaacaaaattacaccatca |
96 |
Q |
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| T |
1481042 |
cttattctaaactcaagaaaggctaaaagtctgtttttcacgagctttcttatactaaaatagaagcctcaatacacaaacaaaattacaccatca |
1480947 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 1481080 - 1481032
Alignment:
| Q |
10 |
aactcaagaaaggctaaaagtctgtttttcacgagctttcttatgctaaa |
59 |
Q |
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| T |
1481080 |
aactcaagaaaggctaaaagtct-tttttcgcgagctttcttattctaaa |
1481032 |
T |
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