View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_244 (Length: 219)
Name: NF1408_low_244
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_244 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 54220718 - 54220921
Alignment:
| Q |
1 |
ctgatgaatgcctgctttatactcttgaaagccatatgaattcaaggtgggagctccgcccggaaaggaaaggaagcgtgaatttgtcgacaacccaaat |
100 |
Q |
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| T |
54220718 |
ctgatgaatgcctgctttatactcttgaaagccatatgaattcaaggtgggagctccgcccggaaaggaaaggaagcgtgaatttgtcgacaacccaaat |
54220817 |
T |
|
| Q |
101 |
ggtctattctctgcacaagcagcaccaaaacctccacaagccatgtacacaatagttgaaggaatgcgagtgggtggaaaggtgatcgaaacacccctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54220818 |
ggtctattctctgcacaagcagcaccaaaacctccacaagccatgtacacaatagttgaaggaatgcgagtgggtggaaaggtgatcgaaacaccccttt |
54220917 |
T |
|
| Q |
201 |
tgat |
204 |
Q |
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|||| |
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| T |
54220918 |
tgat |
54220921 |
T |
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