View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_25 (Length: 488)
Name: NF1408_low_25
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 44767680 - 44767294
Alignment:
| Q |
16 |
atacaataaaaaacaagaaaaactaatcttcacataggaagaattccaaatttgaatcaccccgtgttctacatcatttaggaattctatatcgaacact |
115 |
Q |
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| T |
44767680 |
atacaataaaaaacaacaaaaactaatcttcacataggaagaattccaaatttgaatcaccccgtgttctacatcagttaggaattctaaatcgaacact |
44767581 |
T |
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| Q |
116 |
gtagtagtgtatatactctttaaggttccataataaatcatggcatgaacctgtaataacagtgactatatacatctttctcaaattggtcaattcctat |
215 |
Q |
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| T |
44767580 |
gtagtagtgtatatactctttaaggttccataataaatcatggcatgaacctgtaataacagtgactatatacatctttctcaaattggtcaattcctat |
44767481 |
T |
|
| Q |
216 |
gcacagaatgaataaacaaccataaccaattgatgagctgagcttcgattttaatatttccctagatcccattactcccttaaatccatctatttcctga |
315 |
Q |
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| T |
44767480 |
gcacagaatgaataaacaaccataaccaattgatgagctgagcttcgattttaatatttccctagatcccattactcccttaaatccatctatttcctga |
44767381 |
T |
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| Q |
316 |
accatgttattataatcaactagcaaaggcgttctcctagaactaaagaatttgattgacacaatcatccccccaaataagcaacct |
402 |
Q |
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| T |
44767380 |
accatgttattataatcaactagcaaaggcgttctcctagtactaaagaatttgattgacacaatcatccccccaaataagcaacct |
44767294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 44757372 - 44757322
Alignment:
| Q |
262 |
gattttaatatttccctagatcccattactcccttaaatccatctatttcc |
312 |
Q |
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| T |
44757372 |
gattttaatatttccctagatcccattgctcccctaactcaatctatttcc |
44757322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 396 - 482
Target Start/End: Complemental strand, 39793517 - 39793431
Alignment:
| Q |
396 |
gcaacctaccacttcgtatgatggtatctttagttgtgctcagtcccatttttgtggaaagtagaaacaaacctgttgcagggagag |
482 |
Q |
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| T |
39793517 |
gcaacctaccacttcgtatgatggtatctttagttgtgctcagtcccatttttgtggaaagtagaaacaaacctgttgcagggagag |
39793431 |
T |
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