View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_257 (Length: 213)

Name: NF1408_low_257
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_257
NF1408_low_257
[»] chr8 (25 HSPs)
chr8 (3-131)||(36565679-36565807)
chr8 (6-131)||(36544868-36544993)
chr8 (3-131)||(12492280-12492408)
chr8 (3-125)||(42854442-42854564)
chr8 (4-131)||(4032933-4033060)
chr8 (9-131)||(25439252-25439374)
chr8 (3-103)||(39946601-39946701)
chr8 (9-123)||(25299961-25300075)
chr8 (9-131)||(25288616-25288740)
chr8 (1-124)||(15215707-15215831)
chr8 (4-131)||(18124892-18125018)
chr8 (3-131)||(8879872-8880000)
chr8 (14-122)||(37077490-37077598)
chr8 (4-76)||(2796326-2796398)
chr8 (3-55)||(36395391-36395443)
chr8 (1-131)||(29735526-29735655)
chr8 (4-124)||(13984757-13984877)
chr8 (11-96)||(6510862-6510948)
chr8 (8-131)||(30113640-30113763)
chr8 (36-124)||(13589163-13589251)
chr8 (23-86)||(10824546-10824609)
chr8 (53-131)||(28300596-28300674)
chr8 (75-129)||(42493812-42493866)
chr8 (71-112)||(30748232-30748273)
chr8 (69-125)||(19293784-19293840)
[»] chr7 (24 HSPs)
chr7 (3-131)||(36651710-36651838)
chr7 (3-131)||(31004939-31005067)
chr7 (1-131)||(46356287-46356417)
chr7 (3-131)||(33350244-33350372)
chr7 (3-131)||(35906639-35906767)
chr7 (4-131)||(11593676-11593803)
chr7 (4-131)||(36869728-36869855)
chr7 (3-136)||(43281387-43281520)
chr7 (7-131)||(37616632-37616756)
chr7 (4-131)||(38606721-38606848)
chr7 (4-131)||(33072670-33072797)
chr7 (3-131)||(39906813-39906945)
chr7 (4-131)||(48919104-48919231)
chr7 (3-108)||(34869159-34869264)
chr7 (4-102)||(32630340-32630438)
chr7 (7-102)||(7272785-7272879)
chr7 (3-131)||(49028983-49029120)
chr7 (4-84)||(23404181-23404261)
chr7 (3-60)||(12841713-12841770)
chr7 (84-131)||(24177714-24177761)
chr7 (40-103)||(25579549-25579614)
chr7 (63-96)||(418907-418940)
chr7 (35-112)||(33139006-33139083)
chr7 (63-131)||(21517823-21517891)
[»] chr4 (29 HSPs)
chr4 (3-131)||(23906739-23906867)
chr4 (3-131)||(48622965-48623093)
chr4 (3-131)||(435945-436073)
chr4 (3-130)||(48174531-48174658)
chr4 (3-131)||(1777453-1777581)
chr4 (3-131)||(31960252-31960380)
chr4 (3-131)||(33226925-33227053)
chr4 (7-131)||(53707510-53707634)
chr4 (3-131)||(56375006-56375134)
chr4 (3-131)||(46583262-46583390)
chr4 (4-131)||(50286687-50286814)
chr4 (3-122)||(43433643-43433762)
chr4 (4-131)||(27450612-27450739)
chr4 (4-131)||(47265641-47265770)
chr4 (4-131)||(16002644-16002771)
chr4 (7-131)||(39708173-39708298)
chr4 (4-125)||(1211829-1211950)
chr4 (4-102)||(35690050-35690147)
chr4 (67-131)||(41009855-41009919)
chr4 (62-126)||(45185478-45185542)
chr4 (7-131)||(54914631-54914754)
chr4 (23-124)||(17666496-17666597)
chr4 (70-126)||(1629152-1629208)
chr4 (37-124)||(3273145-3273232)
chr4 (4-42)||(52569954-52569992)
chr4 (4-33)||(1793286-1793315)
chr4 (67-128)||(20917701-20917762)
chr4 (72-112)||(22421216-22421256)
chr4 (69-125)||(54787749-54787805)
[»] chr2 (22 HSPs)
chr2 (3-131)||(452060-452188)
chr2 (4-131)||(8180496-8180623)
chr2 (3-131)||(3244089-3244217)
chr2 (3-131)||(4807308-4807436)
chr2 (3-131)||(38453058-38453186)
chr2 (3-131)||(11992544-11992672)
chr2 (4-131)||(2610244-2610371)
chr2 (4-131)||(3865788-3865915)
chr2 (4-131)||(45368063-45368190)
chr2 (8-127)||(41763484-41763611)
chr2 (12-131)||(24584053-24584172)
chr2 (8-102)||(41197671-41197765)
chr2 (14-131)||(30743339-30743456)
chr2 (4-127)||(6238193-6238315)
chr2 (4-131)||(13149029-13149156)
chr2 (4-70)||(23997394-23997460)
chr2 (8-51)||(12734502-12734545)
chr2 (9-51)||(16097438-16097480)
chr2 (53-124)||(17581191-17581262)
chr2 (4-33)||(36183265-36183294)
chr2 (78-131)||(37281825-37281878)
chr2 (71-127)||(33594775-33594831)
[»] chr5 (23 HSPs)
chr5 (3-131)||(12492825-12492953)
chr5 (4-131)||(28977296-28977423)
chr5 (3-131)||(1274981-1275109)
chr5 (3-131)||(10639013-10639141)
chr5 (3-131)||(2075912-2076040)
chr5 (7-131)||(24178240-24178364)
chr5 (3-131)||(1288027-1288155)
chr5 (1-131)||(3301565-3301695)
chr5 (3-131)||(3394426-3394557)
chr5 (6-131)||(20318707-20318828)
chr5 (3-111)||(34272758-34272866)
chr5 (4-119)||(27622-27737)
chr5 (41-131)||(16347879-16347968)
chr5 (4-124)||(36200505-36200625)
chr5 (70-131)||(43423578-43423639)
chr5 (17-125)||(43558266-43558374)
chr5 (4-55)||(16347817-16347868)
chr5 (53-131)||(20077305-20077383)
chr5 (23-96)||(3096927-3097000)
chr5 (21-110)||(16779419-16779508)
chr5 (64-127)||(27302449-27302509)
chr5 (67-123)||(28676253-28676308)
chr5 (35-111)||(28676330-28676406)
[»] chr3 (17 HSPs)
chr3 (3-131)||(47542149-47542277)
chr3 (3-131)||(51448147-51448275)
chr3 (3-131)||(28245153-28245281)
chr3 (4-131)||(38849810-38849937)
chr3 (8-131)||(25191095-25191218)
chr3 (3-94)||(52138553-52138644)
chr3 (11-98)||(30345276-30345363)
chr3 (8-131)||(54425349-54425472)
chr3 (4-76)||(5168599-5168671)
chr3 (8-131)||(27917288-27917411)
chr3 (3-80)||(53519353-53519430)
chr3 (4-116)||(3186500-3186612)
chr3 (4-131)||(29817220-29817347)
chr3 (23-131)||(48221500-48221608)
chr3 (8-86)||(40674556-40674634)
chr3 (63-131)||(26490033-26490101)
chr3 (26-126)||(50632442-50632542)
[»] chr1 (29 HSPs)
chr1 (4-131)||(30202569-30202696)
chr1 (3-131)||(43240819-43240947)
chr1 (3-131)||(49347831-49347959)
chr1 (1-131)||(51601774-51601904)
chr1 (3-131)||(1210461-1210589)
chr1 (3-131)||(51441203-51441330)
chr1 (4-131)||(8671636-8671763)
chr1 (4-118)||(9592463-9592577)
chr1 (4-131)||(32083184-32083311)
chr1 (3-115)||(22089826-22089938)
chr1 (7-131)||(27445614-27445738)
chr1 (3-131)||(19936238-19936366)
chr1 (3-92)||(8391525-8391614)
chr1 (4-131)||(34827541-34827668)
chr1 (4-131)||(37463306-37463431)
chr1 (17-131)||(51234330-51234444)
chr1 (4-102)||(32404967-32405066)
chr1 (55-131)||(32066761-32066837)
chr1 (66-130)||(52739968-52740032)
chr1 (9-88)||(9599838-9599917)
chr1 (4-131)||(46226721-46226847)
chr1 (3-47)||(696069-696113)
chr1 (3-53)||(15085728-15085778)
chr1 (72-125)||(7921649-7921702)
chr1 (53-126)||(28528302-28528375)
chr1 (64-129)||(35828892-35828957)
chr1 (18-129)||(12807539-12807651)
chr1 (3-51)||(39140310-39140358)
chr1 (9-48)||(41560235-41560274)
[»] scaffold0570 (1 HSPs)
scaffold0570 (3-131)||(2708-2836)
[»] chr6 (14 HSPs)
chr6 (4-131)||(5631534-5631661)
chr6 (3-129)||(20428074-20428200)
chr6 (3-131)||(9706492-9706620)
chr6 (1-127)||(10100293-10100419)
chr6 (4-131)||(5258589-5258716)
chr6 (3-102)||(607904-608003)
chr6 (3-129)||(2689374-2689500)
chr6 (4-101)||(30679220-30679317)
chr6 (19-128)||(33495916-33496025)
chr6 (4-95)||(14030558-14030649)
chr6 (4-131)||(6056209-6056336)
chr6 (4-102)||(2065195-2065294)
chr6 (36-125)||(6641881-6641970)
chr6 (3-86)||(12134339-12134421)
[»] scaffold0018 (1 HSPs)
scaffold0018 (3-131)||(31184-31312)
[»] scaffold0024 (1 HSPs)
scaffold0024 (4-131)||(82437-82564)
[»] scaffold0113 (1 HSPs)
scaffold0113 (7-131)||(12040-12164)
[»] scaffold1493 (1 HSPs)
scaffold1493 (9-131)||(29-153)
[»] scaffold0045 (1 HSPs)
scaffold0045 (17-127)||(87061-87171)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 36565679 - 36565807
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36565679 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatg 36565778  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  36565779 gcttacatctgcttctatttctccgtcat 36565807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 36544993 - 36544868
Alignment:
Q  6 tccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggct 105  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||    
T  36544993 tccgatagaactttcttttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttatccatttcaaccacccaacttgaatacgatgact 36544894  T
Q  106 tacatctgcttctatttctccgtcat 131  Q
    ||||||||||||||||||||||||||    
T  36544893 tacatctgcttctatttctccgtcat 36544868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 12492280 - 12492408
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| | ||||||||||     
T  12492280 ctgtccgatagaactttcctttcatcttaagtggtactttcttatcgcacaaaacacatgaggctcttctccatttcaaccacccaacctgaatacgata 12492379  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  12492380 gcttacatctgcttctatttctccgtcat 12492408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 42854442 - 42854564
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  42854442 ctgtccgatagaattttcctttcagcttaagtggtactttcttatcgcacaaaacacatgaggctcttctccatttcaaccacccagcttgaatacgatg 42854541  T
Q  103 gcttacatctgcttctatttctc 125  Q
      |||||||||||||||||||||    
T  42854542 atttacatctgcttctatttctc 42854564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 4032933 - 4033060
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||     
T  4032933 tgtccgataaaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccaacttgaatatgatga 4033032  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||| ||||| ||||||||| ||||    
T  4033033 tttacatatgcttttatttctccatcat 4033060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 25439374 - 25439252
Alignment:
Q  9 gatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttac 108  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||| ||||||||  ||||    
T  25439374 gatagaactttcctttcaacttaagtggtactttcttatcacacaaaacacccgagactcttctccatttcaaccatcctgcttgcatacgatgatttac 25439275  T
Q  109 atctgcttctatttctccgtcat 131  Q
    || ||||||||||||||||||||    
T  25439274 atatgcttctatttctccgtcat 25439252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 39946701 - 39946601
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  39946701 ctgtccgatagaactttcctttcaatttaagtggtactttcttatcgcacaaaacacctaaggctcttctccatttcaaccatccagcttgaatacgatg 39946602  T
Q  103 g 103  Q
    |    
T  39946601 g 39946601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 25300075 - 25299961
Alignment:
Q  9 gatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttac 108  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||| ||||||||  ||||    
T  25300075 gatagaactttcctttcaacttaattggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaaccccctgcttgcatacgatgatttac 25299976  T
Q  109 atctgcttctatttc 123  Q
    || ||||||||||||    
T  25299975 atatgcttctatttc 25299961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 25288740 - 25288616
Alignment:
Q  9 gatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaacca--cccagcttgaatacgatggctt 106  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||| ||  ||| ||||| ||||||||  ||    
T  25288740 gatagaactttcctttcaacttaattggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaacaccccctgcttgcatacgatgattt 25288641  T
Q  107 acatctgcttctatttctccgtcat 131  Q
    |||| |||||||||||| |||||||    
T  25288640 acatatgcttctatttccccgtcat 25288616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 15215707 - 15215831
Alignment:
Q  1 tactgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacga 100  Q
    |||||| ||||||||||||||||||| |||||| | |||||||||| ||||||| ||||  ||||||||||||||||||||||||| |||||||||||||    
T  15215707 tactgttcgatagaactttcctttcagcttaagtgatactttcttaccgcacaagacactggaggctcttctccatttcaaccacctagcttgaatacga 15215806  T
Q  101 tggcttacatctgc-ttctatttct 124  Q
    ||  |||||||||| ||||||||||    
T  15215807 tgatttacatctgctttctatttct 15215831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 18125018 - 18124892
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| || |||||||| |||| | ||||||||||||||||  |||||||||| |||||     
T  18125018 tgtccgatagaactttcctttcaact-aagtggtactttcttatcacataaaacacctgaggtttttctccatttcaaccattcagcttgaattcgatga 18124920  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||||||||||||||||||| ||||    
T  18124919 gttacatctgcttctatttctccatcat 18124892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 8879872 - 8880000
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||  ||| ||||||| |||||||||| ||| | |||||||||||    
T  8879872 ctgtccgatagaacttttctttcaacttaagtggtactttcttatcgcacaaaacacctaaggttcttctctatttcaaccatccaacatgaatacgatg 8879971  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
       | |||||| |||||||||||| ||||    
T  8879972 ctattcatctggttctatttctccttcat 8880000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 37077598 - 37077490
Alignment:
Q  14 aactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctg 113  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||| ||| ||||||||||||||||||||  |||||||||||||||  ||||||| |    
T  37077598 aacttccctttcaacttaagtggtacttacttatcacacaaaacacctgagactcttctccatttcaaccacttagcttgaatacgatgatttacatcgg 37077499  T
Q  114 cttctattt 122  Q
    |||||||||    
T  37077498 cttctattt 37077490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 2796398 - 2796326
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccat 76  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||||||  ||||||||||||||    
T  2796398 tgtccaatataactttcctttcaacttaagtggtactttcttatcgcacagaacaccgaaggctcttctccat 2796326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 36395391 - 36395443
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaa 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36395391 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaa 36395443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 29735655 - 29735526
Alignment:
Q  1 tactgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacga 100  Q
    ||||||||||||||| |||| ||||||||||||  || |||||||| |  | || ||||  ||  ||| ||||||||||||||||||| |||||||| ||    
T  29735655 tactgtccgatagaattttcatttcaacttaagcagtgctttcttaccagataacacacatgaa-ctcatctccatttcaaccacccaacttgaataaga 29735557  T
Q  101 tggcttacatctgcttctatttctccgtcat 131  Q
    ||  |||||| ||||||||||||||||||||    
T  29735556 tgatttacatatgcttctatttctccgtcat 29735526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 13984877 - 13984757
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||| |||||| |||||||| |||||||    || ||||||||| || |||||||  ||||||||||| ||||||||||| ||| ||| |||||||||     
T  13984877 tgtccaatagaattttccttttaacttaaacaatattttcttatcacataaaacacttgaggctcttcttcatttcaaccatccaacttaaatacgatga 13984778  T
Q  104 cttacatctgcttctatttct 124  Q
     |||||||||||| |||||||    
T  13984777 tttacatctgcttttatttct 13984757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 6510862 - 6510948
Alignment:
Q  11 tagaactttcctttcaacttaaggggtactttcttatcgca-caaaacacccgaggctcttctccatttcaaccacccagcttgaat 96  Q
    |||||||||||||||||||||||  ||||||||||||| || |||| |||  ||| |||||||||||||||||||| || |||||||    
T  6510862 tagaactttcctttcaacttaagcagtactttcttatcacatcaaaccacatgagactcttctccatttcaaccactcaacttgaat 6510948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 30113640 - 30113763
Alignment:
Q  8 cgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggctta 107  Q
    ||||| || ||| ||||||||||||  |||| ||||||||| || |||||||| | | |||||||||||||||||||   ||||||||||| |||  |||    
T  30113640 cgatataatttttctttcaacttaatcggta-tttcttatcacataaaacacctgcgactcttctccatttcaaccatttagcttgaatacaatgattta 30113738  T
Q  108 catctgcttc-tatttctccgtcat 131  Q
    |||||||||| | ||||||||||||    
T  30113739 catctgcttcttttttctccgtcat 30113763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 13589251 - 13589163
Alignment:
Q  36 gtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttct 124  Q
    |||||||||||| ||| |||||||   |||||||||||||||||||||| ||| |||||||| | ||  || ||| |||||||||||||    
T  13589251 gtactttcttatagcataaaacacatcaggctcttctccatttcaaccatccaccttgaatatggtgattttcatatgcttctatttct 13589163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 10824546 - 10824609
Alignment:
Q  23 ttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacc 86  Q
    ||||||||||  |||| |||| |||| || |||||||| ||| |||||||||||||||||||||    
T  10824546 ttcaacttaactggtattttcgtatcacataaaacacctgagactcttctccatttcaaccacc 10824609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 28300596 - 28300674
Alignment:
Q  53 aaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcat 131  Q
    |||||| ||||| |||||||||| || ||||| ||| |||||||||||||   ||||||||||| ||| |||| |||||    
T  28300596 aaaacatccgagtctcttctccaatttaaccatccaacttgaatacgatgatgtacatctgcttttatatctcagtcat 28300674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 42493812 - 42493866
Alignment:
Q  75 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtc 129  Q
    |||| ||||||||||||| ||| | |||| |||||||| ||||||||||||||||    
T  42493812 attttaaccacccagcttaaattccatggtttacatctccttctatttctccgtc 42493866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 30748273 - 30748232
Alignment:
Q  71 ctccatttcaaccacccagcttgaatacgatggcttacatct 112  Q
    |||||||||||||||| ||||||||| |||||| ||||||||    
T  30748273 ctccatttcaaccacctagcttgaattcgatggtttacatct 30748232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 19293784 - 19293840
Alignment:
Q  69 ttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctc 125  Q
    |||||||||||||||||||| ||| ||||||||   |||||||||||| | ||||||    
T  19293784 ttctccatttcaaccacccaacttaaatacgattatttacatctgcttttttttctc 19293840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 36651838 - 36651710
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36651838 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatg 36651739  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  36651738 gcttacatctgcttctatttctccgtcat 36651710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 31005067 - 31004939
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  31005067 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccaacttgaatacgatg 31004968  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  31004967 gcttacatctgcttctatttctccgtcat 31004939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 46356287 - 46356417
Alignment:
Q  1 tactgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacga 100  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  46356287 tactgtccgatagaactttcctttcaacttaagtagtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccaacttgaatacga 46356386  T
Q  101 tggcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||||    
T  46356387 tggcttacatctgcttctatttctccgtcat 46356417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 33350244 - 33350372
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  33350244 ctgtccgatagaactttcctgtcaacttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaaccacccagcttgaatacgatg 33350343  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  33350344 gcttacatctgcttctatttctccgtcat 33350372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 35906639 - 35906767
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||    
T  35906639 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaagatcttctccatttcaaccacccagcttgaatacgatg 35906738  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  35906739 gcttacatctgcttctatttctccgtcat 35906767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 11593803 - 11593676
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11593803 tgtccgatagaactttcctttcaacttaagtggtacttttttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatgg 11593704  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
    ||||||||||||||||||||||| ||||    
T  11593703 cttacatctgcttctatttctccatcat 11593676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 36869728 - 36869855
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  36869728 tgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacccctgaggctcttctccatttcaaccacccagcttgaatacgatgg 36869827  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
    ||||||||||||| ||||||| ||||||    
T  36869828 cttacatctgcttttatttcttcgtcat 36869855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 43281520 - 43281387
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  43281520 ctgtccgatagaactttcctttcagcttaagtggtactttcttatcgcacaaaacgcctgaggctcttctccatttcaaccacccagcttgaatacgatg 43281421  T
Q  103 gcttacatctgcttctatttctccgtcatattct 136  Q
      ||||||||||||||||||||||||||| ||||    
T  43281420 atttacatctgcttctatttctccgtcattttct 43281387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 37616756 - 37616632
Alignment:
Q  7 ccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggctt 106  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||    
T  37616756 ccgatataactttcctttcaacttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaaccacccagcttgaatacaatggctt 37616657  T
Q  107 acatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||    
T  37616656 acatctgcttctatttctccgtcat 37616632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 38606848 - 38606721
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  38606848 tgtccgatagaactttcctttcagcttaagtggtactttcttatcgcacaaaacacctaaggctcttctccatttcaaccacccagcttgaatacgatgg 38606749  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||||||||||||||||| ||||||    
T  38606748 tttacatctgcttctatttcttcgtcat 38606721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 33072797 - 33072670
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||    
T  33072797 tgtccgatagaactttccttttaacttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaaccatccaacttgaatacgatgg 33072698  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||| || ||||||||    
T  33072697 cttacatctgcttctaattatccgtcat 33072670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 39906813 - 39906945
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccattt----caaccacccagcttgaatac 98  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||    ||||||||||||||||||||    
T  39906813 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacatctgaggctcttctccatttcaaccaaccacccagcttgaatac 39906912  T
Q  99 gatggcttacatctgcttctatttctccgtcat 131  Q
    |||||||| ||||| ||||||||||||||||||    
T  39906913 gatggcttgcatctacttctatttctccgtcat 39906945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 48919231 - 48919104
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||     
T  48919231 tgtccgatataaccttcctttcaacttaaggggtactttcttatcgcacaaaacacctgaggctcttctccatttcaactacccagcttgaatacgatga 48919132  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     | |||| ||||||||||||||||||||    
T  48919131 ttcacatatgcttctatttctccgtcat 48919104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 34869264 - 34869159
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||    
T  34869264 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacgcctgaggctcttctccaattcaaccacccagcttgaatatgatg 34869165  T
Q  103 gcttac 108  Q
    ||||||    
T  34869164 gcttac 34869159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 32630438 - 32630340
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  32630438 tgtccgatagaactttcctttcagcttaagtgatactttcttatcgcacaaaacactcgaggctcttctccatttcaactacccagcttgaatacgatg 32630340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 7272879 - 7272785
Alignment:
Q  7 ccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||| ||||||||| |||||||||| |||||||||||||| ||||||| ||| |||||| ||||| || |||||||||||||||||||||||||    
T  7272879 ccgatacaactttcctctcaacttaagtggtactttcttatcacacaaaatacctgaggct-ttctcaatctcaaccacccagcttgaatacgatg 7272785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 49029120 - 49028983
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttca--------------accaccca 88  Q
    ||||||||||||||||||||||||| |     |||| ||||||||||||||||||||| |||||||||||||||||||              ||||||||    
T  49029120 ctgtccgatagaactttcctttcaagt-----ggtattttcttatcgcacaaaacacctgaggctcttctccatttcaaccaaccacaaccaaccaccca 49029026  T
Q  89 gcttgaatacgatggcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  49029025 gcttgaatacgatggcatacatctgcttctatttctccatcat 49028983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 23404261 - 23404181
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaacca 84  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||| || |||||||| ||||||||||||||||| |||||    
T  23404261 tgtccgatagaattttcctttcaacttaagtggtcctttcttatctcagaaaacacctgaggctcttctccattttaacca 23404181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 12841713 - 12841770
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacc 60  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12841713 ctgtacgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacc 12841770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 24177714 - 24177761
Alignment:
Q  84 acccagcttgaatacgatggcttacatctgcttctatttctccgtcat 131  Q
    ||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  24177714 acccaacttgaatatgatgatttacatctgcttctatttctccgtcat 24177761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 25579549 - 25579614
Alignment:
Q  40 tttcttatcgcacaaaacacccgaggctct--tctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||| |||| || |||| ||||||||||||  ||||||||| ||||||||| ||||||||||||||    
T  25579549 tttcgtatcacataaaatacccgaggctctcttctccattttaaccacccaacttgaatacgatgg 25579614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 418907 - 418940
Alignment:
Q  63 aggctcttctccatttcaaccacccagcttgaat 96  Q
    |||||||||||||||||| |||||||||||||||    
T  418907 aggctcttctccatttcacccacccagcttgaat 418940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 33139083 - 33139006
Alignment:
Q  35 ggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatct 112  Q
    ||||| |||||| ||||||| ||||   | ||||||||||||||||| |||||| | |||||||||||  ||||||||    
T  33139083 ggtacattcttagcgcacaatacacattaagctcttctccatttcaatcacccaacatgaatacgatgatttacatct 33139006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 21517823 - 21517891
Alignment:
Q  63 aggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcat 131  Q
    ||||||||||| |||||||||||||| |||||||| ||||  |||||| || |  ||||||| ||||||    
T  21517823 aggctcttctcgatttcaaccacccaacttgaatatgatgatttacatatgttattatttcttcgtcat 21517891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 23906739 - 23906867
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23906739 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatg 23906838  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  23906839 gcttacatctgcttctatttctccgtcat 23906867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 48622965 - 48623093
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  48622965 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggcttttctccatttcaaccacccagcttgaatacgatg 48623064  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  48623065 gcttacatctgcttctatttctccgtcat 48623093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 436073 - 435945
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  436073 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccactcagcttgaatacgatg 435974  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
     ||||||||||||||||||||||||||||    
T  435973 acttacatctgcttctatttctccgtcat 435945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 48174531 - 48174658
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  48174531 ctgtccgatagaactttcctttcaacttaagtggtactttcttattgcacaaaacacctgaggctcttctccatttcaaccacctagcttgaatacgatg 48174630  T
Q  103 gcttacatctgcttctatttctccgtca 130  Q
    ||||||||||||||||||||||||||||    
T  48174631 gcttacatctgcttctatttctccgtca 48174658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 1777453 - 1777581
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1777453 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatg 1777552  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
     ||||||| |||||||||||||| |||||    
T  1777553 acttacatttgcttctatttctctgtcat 1777581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 31960252 - 31960380
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||    
T  31960252 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacatatgaggctcttctccatttcaaccacccagcttgaatatgatg 31960351  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  31960352 gcttacatctgcttctatttctccgtcat 31960380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 33227053 - 33226925
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  33227053 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgtacaaaacacctgagactcttctccatttcaaccacccagcttgaatatgatg 33226954  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  33226953 gcttacatctgcttctatttctccgtcat 33226925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 53707634 - 53707510
Alignment:
Q  7 ccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggctt 106  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||    
T  53707634 ccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacatctgagtctcttctccatttcaaccacccagcttgaatacgatggctt 53707535  T
Q  107 acatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||    
T  53707534 acatctgcttctatttctccgtcat 53707510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 56375134 - 56375006
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  56375134 ctgtccgatagatctttcctttcaaattaagtggtactttcttatcgcacaaaacacctgaggctcttctcaatttcaaccacccagcttgaatacgatg 56375035  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    ||||| |||||||||||||||||||||||    
T  56375034 gcttatatctgcttctatttctccgtcat 56375006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 46583262 - 46583390
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||| |||||||||||||||||| ||||| | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  46583262 ctgtccaatagaactttcctttcaaattaagtgatactttcttatcgcacaaaatacctgaggctcttctccatttcaaccacccagcttgaatatgatg 46583361  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  46583362 gcttacatctgcttctatttctccgtcat 46583390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 50286814 - 50286687
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||  | | ||||||| ||||||||||||||||||||||||||||||    
T  50286814 tgtccgatagaactttcctttcaacttaaatggtactttcttatcgcacaaaacacatgtgactcttcttcatttcaaccacccagcttgaatacgatgg 50286715  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
    ||||||||||||||||||||||||||||    
T  50286714 cttacatctgcttctatttctccgtcat 50286687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 43433762 - 43433643
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  43433762 ctgtccgatagaactttcctttcaacttaagtgacactttcttatcgcacaaaacacctgaggctcttctccatttcaatcacccagcttgaatacgatg 43433663  T
Q  103 gcttacatctgcttctattt 122  Q
    | ||||||||||||||||||    
T  43433662 gtttacatctgcttctattt 43433643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 27450612 - 27450739
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||| ||||||| |||||||||| |||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||     
T  27450612 tgtctgatagaattttcctttcagcttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaaccacccagcttgaatacgatga 27450711  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||||||||||||||||||| ||||    
T  27450712 tttacatctgcttctatttctccatcat 27450739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 47265641 - 47265770
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtact---ttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacga 100  Q
    |||| |||||||||||| |||||||||||| ||||||   ||||||||||||||||||||  |||||||||| |||||||| ||||||||||||| ||||    
T  47265641 tgtcagatagaactttcatttcaacttaagtggtactactttcttatcgcacaaaacacctaaggctcttcttcatttcaatcacccagcttgaa-acga 47265739  T
Q  101 tggcttacatctgcttctatttctccgtcat 131  Q
    |||||||||| ||||||||||||||||||||    
T  47265740 tggcttacatttgcttctatttctccgtcat 47265770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 16002771 - 16002644
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||| |||| |||||| |||| |||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||| |||||||||     
T  16002771 tgtctgataaaacttttctttgaacttaagtggtactttcttatcacacaaaacacctgaggctcttctcaatttcaaccactcagcttaaatacgatga 16002672  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||||||||||||| ||||||||||    
T  16002671 tttacatctgcttctatgtctccgtcat 16002644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 39708298 - 39708173
Alignment:
Q  7 ccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaac-acccgaggctcttctccatttcaaccacccagcttgaatacgatggct 105  Q
    ||||||||||||||||||||||||||| |||||||||||||| || ||||| |||  |||||||| ||||||||||||| ||||||||||||||| |  |    
T  39708298 ccgatagaactttcctttcaacttaagtggtactttcttatcacaaaaaaccacctaaggctcttatccatttcaaccatccagcttgaatacgaggatt 39708199  T
Q  106 tacatctgcttctatttctccgtcat 131  Q
    |||| |||||||||||||||||||||    
T  39708198 tacacctgcttctatttctccgtcat 39708173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 1211829 - 1211950
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||||||||||||||||||||| |||| |||||||||  ||||||||   ||||||||||||||||||||| ||| | |||||||||||||     
T  1211829 tgtccgatagaactttcctttcaacttaagtggtattttcttatcatacaaaacatttgaggctcttctccatttcaactacctaacttgaatacgatga 1211928  T
Q  104 cttacatctgcttctatttctc 125  Q
     ||||| |||||||||||||||    
T  1211929 tttacacctgcttctatttctc 1211950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 35690147 - 35690050
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||| ||||||| |||||| |||||||||  || ||||||||||| || ||||||||||   ||||||||||||||||||||||| |||||||||||||    
T  35690147 tgtctgatagaattttcctctcaacttaaacggcactttcttatcacataaaacacccgca-ctcttctccatttcaaccacccaacttgaatacgatg 35690050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 41009855 - 41009919
Alignment:
Q  67 tcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||| | ||||||||||| |  |||||| ||||||||||||||||||||    
T  41009855 tcttctccatttcaaccacctaacttgaatacgaagatttacatttgcttctatttctccgtcat 41009919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 45185478 - 45185542
Alignment:
Q  62 gaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctcc 126  Q
    ||||||||||||| ||||||||||  ||||||||||| |||  ||||||||||||||||||||||    
T  45185478 gaggctcttctccctttcaaccactaagcttgaatacaatgatttacatctgcttctatttctcc 45185542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 54914631 - 54914754
Alignment:
Q  7 ccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggctt 106  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| || |||||| || | ||| |||||||||||||||||     |||||||| | |  ||    
T  54914631 ccgatagaattttcctttcaacttaagtggtattttcttatcacataaaaca-ccaaagcttttctccatttcaaccacatgatttgaatacaaggattt 54914729  T
Q  107 acatctgcttctatttctccgtcat 131  Q
    ||||||| |||||||||||| ||||    
T  54914730 acatctgtttctatttctccatcat 54914754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 17666496 - 17666597
Alignment:
Q  23 ttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctattt 122  Q
    |||||||||| |||||| ||  |||| || |||||||  || |||||||||||||||||| | ||| |||||||||||||  |||||| ||||| |||||    
T  17666496 ttcaacttaaagggtacgtttgtatcacataaaacacatgatgctcttctccatttcaacaatccaacttgaatacgatgatttacatttgcttttattt 17666595  T
Q  123 ct 124  Q
    ||    
T  17666596 ct 17666597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 1629208 - 1629152
Alignment:
Q  70 tctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctcc 126  Q
    |||||||||||||||| ||  ||||||||||||  ||||||||||||||||||||||    
T  1629208 tctccatttcaaccactcaagttgaatacgatgatttacatctgcttctatttctcc 1629152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 3273232 - 3273145
Alignment:
Q  37 tactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttct 124  Q
    ||||||| |||| || ||||||   ||||||| ||||||||||||||| ||| ||||||| |||||| ||| || |||||||||||||    
T  3273232 tactttcgtatcacataaaacaaatgaggctcatctccatttcaaccatccaacttgaattcgatggtttatatttgcttctatttct 3273145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 52569954 - 52569992
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtacttt 42  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  52569954 tgtccaatagaactttcctttcaacttaagtggtacttt 52569992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 1793315 - 1793286
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaag 33  Q
    ||||||||||||||||||||||||||||||    
T  1793315 tgtccgatagaactttcctttcaacttaag 1793286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 20917762 - 20917701
Alignment:
Q  67 tcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgt 128  Q
    |||||||||||| ||||| | || |||||| ||||| ||||||| || ||||||||||||||    
T  20917762 tcttctccattttaaccatctagattgaattcgatgacttacatatgtttctatttctccgt 20917701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 22421216 - 22421256
Alignment:
Q  72 tccatttcaaccacccagcttgaatacgatggcttacatct 112  Q
    ||||||||||||||||||||||||| | |||| ||||||||    
T  22421216 tccatttcaaccacccagcttgaattcaatggtttacatct 22421256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 54787749 - 54787805
Alignment:
Q  69 ttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctc 125  Q
    |||||||||||||||||||| ||| ||||||||   |||||||||||| | ||||||    
T  54787749 ttctccatttcaaccacccaacttaaatacgattatttacatctgcttttttttctc 54787805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 452060 - 452188
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  452060 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatg 452159  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  452160 gcttacatctgcttctatttctccgtcat 452188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 8180623 - 8180496
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  8180623 tgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaactcttgaggctcttctccatttcaaccacccagcttgaatacgatgg 8180524  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
    ||||||||||||||||||||||||||||    
T  8180523 cttacatctgcttctatttctccgtcat 8180496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 3244089 - 3244217
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||    
T  3244089 ctgtccgatagaactttcctttcaacataagtggtactttcttatcgcacaaaacacctgaggctcatctccatttctaccacccagcttgaatacgatg 3244188  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  3244189 gcttacatctgcttctatttctccgtcat 3244217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 4807436 - 4807308
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||    
T  4807436 ctgtccgatagaactttcctttcaacttaaatggtactttcttatcgcacaaaacacctgagactcttctccatttcaaccacccatcttgaatacgatg 4807337  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  4807336 gcttacatctgcttctatttctccgtcat 4807308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 38453058 - 38453186
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||    
T  38453058 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacatgaggctcttctccatttcaaccacccagcttgaatatgatg 38453157  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||| ||||||||||||||||||||    
T  38453158 gcttacatatgcttctatttctccgtcat 38453186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 11992544 - 11992672
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11992544 ctgtccgatagaactttcctttcagcttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatg 11992643  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
      |||||||||||||||||||||| ||||    
T  11992644 atttacatctgcttctatttctccatcat 11992672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 2610371 - 2610244
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  2610371 tgtccgatagaactttcctttcaacttaagtggtactttcttatcgcataaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatgg 2610272  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     ||||||||||||||||||||| |||||    
T  2610271 tttacatctgcttctatttctctgtcat 2610244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 3865915 - 3865788
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |    
T  3865915 tgtccgatagaactttcctttcaacttaagtagtactttcttatcacacaaaacatctgaggctcttctccatttcaaccacccagcttgaatacgatag 3865816  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
    ||||||| ||||||||||||||||||||    
T  3865815 cttacatttgcttctatttctccgtcat 3865788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 45368063 - 45368190
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||      
T  45368063 tgtccgataaaactttcctttcagcttaagtggtactttcttatcgcacaaaacacctgagactcttctccatttcaaccacccagcttgaatacgataa 45368162  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||||||||||||||||||| ||||    
T  45368163 tttacatctgcttctatttctccatcat 45368190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 41763484 - 41763611
Alignment:
Q  8 cgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctcca--------tttcaaccacccagcttgaatacg 99  Q
    ||||||||||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||    
T  41763484 cgatagaactttccttttagcttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaagttttcaaccacccagcttgaatacg 41763583  T
Q  100 atggcttacatctgcttctatttctccg 127  Q
    |||  |||||||||||||||||||||||    
T  41763584 atgatttacatctgcttctatttctccg 41763611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 24584053 - 24584172
Alignment:
Q  12 agaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatc 111  Q
    |||||||| ||||||||||||| |||| |||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||| |||    
T  24584053 agaacttttctttcaacttaagtggtattttcttttcgcacaaaacacacgaggctattctccatttccaccacccagcttgaatatgatggcttaaatc 24584152  T
Q  112 tgcttctatttctccgtcat 131  Q
    ||| | ||||||||| ||||    
T  24584153 tgcctatatttctccatcat 24584172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 41197671 - 41197765
Alignment:
Q  8 cgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||    
T  41197671 cgatagaactttcctttcagcttaagtggtacttttttatcgcacaaaacacctgagactcttctccatttcaaccacccaacttgaatacgatg 41197765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 30743456 - 30743339
Alignment:
Q  14 aactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctg 113  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||| ||||||| ||| ||||||||||||||||  ||| ||||     
T  30743456 aactttcctttcaacttaagtggtactttcttatcacacaaaacacatgaggctcttctcaatttcaatcactcagcttgaatacgatgatttatatcta 30743357  T
Q  114 cttctatttctccgtcat 131  Q
    ||||||||| ||||||||    
T  30743356 cttctatttatccgtcat 30743339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 6238193 - 6238315
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||| |||| |||||||||||| |||| ||| ||||| ||||||||||  ||||||||||||||||||||||| ||| |||||||||||||     
T  6238193 tgtccgatagaattttcttttcaacttaagtggtatttt-ttatcacacaaaacacatgaggctcttctccatttcaaccatccaacttgaatacgatga 6238291  T
Q  104 cttacatctgcttctatttctccg 127  Q
     |||||| || || ||||||||||    
T  6238292 tttacatatgtttttatttctccg 6238315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 13149156 - 13149029
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||| ||| || |||||||| ||||| || ||||||||||||||  |  ||||||| || |||||||| ||||||||||| ||| |||||||||||||     
T  13149156 tgtccaatataattttccttttaacttgagtggtactttcttatcatatgaaacacctgaagctcttcttcatttcaaccatccaacttgaatacgatga 13149057  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     ||  |||| ||||||||||||||||||    
T  13149056 tttgtatctacttctatttctccgtcat 13149029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 23997460 - 23997394
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctctt 70  Q
    ||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||| | |||||||    
T  23997460 tgtccgatagaactttcctttcagcttaagtggtattttctcatcgcacaaaacacctggggctctt 23997394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 12734545 - 12734502
Alignment:
Q  8 cgatagaactttcctttcaacttaaggggtactttcttatcgca 51  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  12734545 cgatagaactttcctttcaacttaagtggtactttcttgtcgca 12734502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 16097438 - 16097480
Alignment:
Q  9 gatagaactttcctttcaacttaaggggtactttcttatcgca 51  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  16097438 gatagaactttcctttcaacttaagtggtaccttcttatcgca 16097480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 17581262 - 17581191
Alignment:
Q  53 aaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttct 124  Q
    |||||||| ||| ||||||||||||| ||||| ||| |||||||| || |  |||||||||||| |||||||    
T  17581262 aaaacacctgagactcttctccatttgaaccatccaacttgaatatgaggatttacatctgcttttatttct 17581191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 36183294 - 36183265
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaag 33  Q
    ||||||||||||||||||||||||||||||    
T  36183294 tgtccgatagaactttcctttcaacttaag 36183265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 37281878 - 37281825
Alignment:
Q  78 tcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcat 131  Q
    ||||||||||| |||||||| ||||  |||||||| ||||||||||||| ||||    
T  37281878 tcaaccacccaacttgaataggatgatttacatctacttctatttctccttcat 37281825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 33594775 - 33594831
Alignment:
Q  71 ctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccg 127  Q
    |||||| |||||||||||| ||||||  ||||  |||||||| ||||||||||||||    
T  33594775 ctccatctcaaccacccagtttgaatttgatgttttacatctccttctatttctccg 33594831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 12492825 - 12492953
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12492825 ctgtccgatagaactttcctttcaacttaagtggtactttcttattgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatg 12492924  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  12492925 gcttacatctgcttctatttctccgtcat 12492953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 28977296 - 28977423
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28977296 tgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 28977395  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
    ||||||||| |||||||| |||||||||    
T  28977396 cttacatctacttctattactccgtcat 28977423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 1275109 - 1274981
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  1275109 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacaccttaggctcttcttcatttcaaccacccagcttgaatacgatg 1275010  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  1275009 gcttacatctgcttctatttctccgtcat 1274981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 10639141 - 10639013
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  10639141 ctgttcgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctaaggctcttctccatttcaaccacccagcttgaatacgatg 10639042  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  10639041 gcttacatctgcttctatttctccgtcat 10639013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 2075912 - 2076040
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| |||||||||||||    
T  2075912 ctgtccgatagaactttcctttcaacttaagtggtactttcttattgcacaaaacacctgaggctcttcttcatttcaaccacccaacttgaatacgatg 2076011  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    ||||||||||||||||||||||| |||||    
T  2076012 gcttacatctgcttctatttctctgtcat 2076040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 24178364 - 24178240
Alignment:
Q  7 ccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggctt 106  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||||    
T  24178364 ccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaaccacccaacttgaatatgatggctt 24178265  T
Q  107 acatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||    
T  24178264 acatctgcttctatttctccgtcat 24178240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 1288027 - 1288155
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||| |||||||||||||||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||    
T  1288027 ctgttcgatagaactttcctttcaacttaaatggtactttcttatcgcacaaaacacatgaggctcttctccatttcaaccatccaacttgaatacgatg 1288126  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  1288127 gcttacatctgcttctatttctccgtcat 1288155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 3301695 - 3301565
Alignment:
Q  1 tactgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacga 100  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  3301695 tactgtccgatagaactttcctttcaatttaagtggtactttcttatcgcacaaaacacctgaggctcatctctatttcaaccacccagcttgaatacga 3301596  T
Q  101 tggcttacatctgcttctatttctccgtcat 131  Q
    ||  || ||||||||||||||||||| ||||    
T  3301595 tgatttgcatctgcttctatttctccttcat 3301565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 3394557 - 3394426
Alignment:
Q  3 ctgtccgatagaactttcct---ttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacg 99  Q
    ||||||||||||||||||||   |||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  3394557 ctgtccgatagaactttcctcctttcagcttaagtggtactttcttatcgcacaaaacacctgaggctcatctccatttcaaccacccagcttgaatacg 3394458  T
Q  100 atggcttacatctgcttctatttctccgtcat 131  Q
    |||  |||||||||||||||||||||||||||    
T  3394457 atgatttacatctgcttctatttctccgtcat 3394426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 20318828 - 20318707
Alignment:
Q  6 tccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggct 105  Q
    ||||||| |||||||||||||||||||| |||||||    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  20318828 tccgatataactttcctttcaacttaagtggtactt----atcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatggct 20318733  T
Q  106 tacatctgcttctatttctccgtcat 131  Q
    ||||||||||||||||||||||||||    
T  20318732 tacatctgcttctatttctccgtcat 20318707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 34272866 - 34272758
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||    
T  34272866 ctgtccgattgaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccattttaaccacccaacttgaatacgatg 34272767  T
Q  103 gcttacatc 111  Q
    |||||||||    
T  34272766 gcttacatc 34272758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 27737 - 27622
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||| |  ||||||| |||| |||||||| ||||| |||||||| |||||||| ||||     
T  27737 tgtcagatagaattttcctttcaacttaagtggtactttcttatcacgtaaaacactcgagactcttctctatttccaccacccaacttgaatatgatga 27638  T
Q  104 cttacatctgcttcta 119  Q
     |||||| || |||||    
T  27637 tttacatttgattcta 27622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 16347879 - 16347968
Alignment:
Q  41 ttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcat 131  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||| | |||||||||||||  ||||||  |||| ||||||||||||||    
T  16347879 ttcttattgcacaaaacacctgaggctcttctccatttcaaccaccta-cttgaatacgatgatttacatacgcttttatttctccgtcat 16347968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 36200625 - 36200505
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||| ||||| ||||||||||||||||   | | ||||||||| || |||||||  ||| ||||||||||||||||||||||| ||| |||| ||||     
T  36200625 tgtccggtagaattttcctttcaacttaaacagcattttcttatcacataaaacacatgagtctcttctccatttcaaccacccaacttaaatatgatga 36200526  T
Q  104 cttacatctgcttctatttct 124  Q
     |||||| |||| ||||||||    
T  36200525 tttacatatgctactatttct 36200505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 43423578 - 43423639
Alignment:
Q  70 tctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcat 131  Q
    ||||||||||||||||||| |||||||| ||||  |||||||||||||| ||||||||||||    
T  43423578 tctccatttcaaccacccaacttgaatatgatgatttacatctgcttctgtttctccgtcat 43423639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 43558266 - 43558374
Alignment:
Q  17 tttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgctt 116  Q
    ||||| |||||||| || ||||||||  |||| || |||||||   ||||| ||||||||||| || |||| |||||||| |||||  ||||||||||||    
T  43558266 tttcccttcaacttgagcggtactttagtatcacataaaacactttaggctattctccatttccactaccctgcttgaattcgatgatttacatctgctt 43558365  T
Q  117 ctatttctc 125  Q
    |||||||||    
T  43558366 ctatttctc 43558374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 16347817 - 16347868
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaa 55  Q
    |||||||||||||||||||||||||||||| |||| |||||||| |||||||    
T  16347817 tgtccgatagaactttcctttcaacttaagtggtaatttcttattgcacaaa 16347868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 20077305 - 20077383
Alignment:
Q  53 aaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcat 131  Q
    |||||||| ||||||||||||||||||||||| ||| | |||| | ||||  || |||||||||  |||||||||||||    
T  20077305 aaaacacctgaggctcttctccatttcaaccatccaacctgaaaatgatgatttgcatctgctttaatttctccgtcat 20077383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 3097000 - 3096927
Alignment:
Q  23 ttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaat 96  Q
    ||||||||||| |||| ||||  ||| || ||||||||  |||||||  ||||||||||||||||| |||||||    
T  3097000 ttcaacttaagcggtattttcacatcacataaaacacctaaggctctcatccatttcaaccacccaacttgaat 3096927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 16779508 - 16779419
Alignment:
Q  21 ctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacat 110  Q
    |||||||||| |  ||||||||| |||| || |||||| | ||| |||||||||||||||||||| ||  ||||||  ||||| ||||||    
T  16779508 ctttcaacttgaatggtactttcgtatcacataaaacatctgagtctcttctccatttcaaccactcaaattgaatttgatggtttacat 16779419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 27302449 - 27302509
Alignment:
Q  64 ggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccg 127  Q
    ||||||| |||||||||||||| || |||||||||||||  ||||||   ||||||||||||||    
T  27302449 ggctcttttccatttcaaccactcaacttgaatacgatgatttacat---cttctatttctccg 27302509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 28676308 - 28676253
Alignment:
Q  67 tcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttc 123  Q
    ||||||||||||||||||| || |||||||||||||  || ||| ||||||||||||    
T  28676308 tcttctccatttcaaccacaca-cttgaatacgatgatttgcatatgcttctatttc 28676253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 28676406 - 28676330
Alignment:
Q  35 ggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatc 111  Q
    ||||||||| |||| || |||| || ||||||||||||||||||||  ||||||   |||||||||||  |||||||    
T  28676406 ggtactttcatatcacataaaatactcgaggctcttctccatttcattcacccataatgaatacgatgatttacatc 28676330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 47542149 - 47542277
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  47542149 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatg 47542248  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  47542249 gcttacatctgcttctatttctccgtcat 47542277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 51448147 - 51448275
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  51448147 ctgtccgatataactttcctttcaacttaagtggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgata 51448246  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||    
T  51448247 gcttacatctgcttctatttctccgtcat 51448275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 28245281 - 28245153
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  28245281 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacaactgagactcttctccatttcaaccacccagcttgaatacgatg 28245182  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||| ||||    
T  28245181 gcttacatctgcttctatttctccatcat 28245153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 38849937 - 38849810
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||||||| ||  || ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  38849937 tgtccgataaaaaatttctttcaacttaagtggtactttgttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacaatgg 38849838  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
    ||||||||||||||||||||||||||||    
T  38849837 cttacatctgcttctatttctccgtcat 38849810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 25191218 - 25191095
Alignment:
Q  8 cgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggctta 107  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  |||    
T  25191218 cgatagaaccttcctttcaacttaagtggtactttcttatcgcacaaaacacctgagactcttctccatttcaaccacccagcttgaatacgatgattta 25191119  T
Q  108 catctgcttctatttctccgtcat 131  Q
    ||| ||||||||||||||| ||||    
T  25191118 catttgcttctatttctccatcat 25191095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 52138644 - 52138553
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttga 94  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  52138644 ctgtccgatagaactttcctttcaacttaagtggtattttcttatcgcacaagacacctgagactcttctccatttcaaccacccagcttga 52138553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 30345363 - 30345276
Alignment:
Q  11 tagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatac 98  Q
    ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||    
T  30345363 tagaattttcctttcaatttaagcggtactttcttatcgcataaaacacctgagactcttctccatttcaaccacccaacttgaatac 30345276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 54425349 - 54425472
Alignment:
Q  8 cgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggctta 107  Q
    ||||| || ||||||| ||||||||| |||||||||||||| ||||||||||  ||| ||||| | |||||||||| || ||||| |||||||||  |||    
T  54425349 cgataaaattttccttccaacttaagtggtactttcttatcacacaaaacacatgagactctttttcatttcaaccgcctagcttaaatacgatgattta 54425448  T
Q  108 catctgcttctatttctccgtcat 131  Q
    ||| ||||||||||||||||||||    
T  54425449 catatgcttctatttctccgtcat 54425472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 5168671 - 5168599
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccat 76  Q
    |||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  5168671 tgtccgatagaattttcctttcagcttaagtggtactttcttatcgcacaaaacacctgaggctcttctccat 5168599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 27917411 - 27917288
Alignment:
Q  8 cgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggctta 107  Q
    |||||||| ||| | ||||||||||| |||||||| ||||| || |||||||  |||||||||||| |||||| | ||||| |||||||||||||  |||    
T  27917411 cgatagaatttttcattcaacttaagtggtacttttttatcacataaaacacatgaggctcttctctatttcagctacccaacttgaatacgatgattta 27917312  T
Q  108 catctgcttctatttctccgtcat 131  Q
     || ||||| ||||||||||||||    
T  27917311 tatatgcttatatttctccgtcat 27917288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 53519430 - 53519353
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttca 80  Q
    ||||||||||||  |||||||| | |||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  53519430 ctgtccgatagatttttcctttaagcttaagtgatactttcttatcgcacaaaacacctgaggctcttctccatttca 53519353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 3186612 - 3186500
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||||||| |||||||||||||||||||| | |||||||||||| |  |||||||  ||   | |||| ||||||||||||||| |||||||||||||     
T  3186612 tgtccgatataactttcctttcaacttaagtgatactttcttatcacctaaaacacatgaaaatattcttcatttcaaccacccaacttgaatacgatgt 3186513  T
Q  104 cttacatctgctt 116  Q
     ||||||||||||    
T  3186512 tttacatctgctt 3186500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 29817347 - 29817220
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||| ||||| ||| ||||||||||||| | |||||||||||| || ||||||    || || ||||| |||||||||||||| |||||||||||||     
T  29817347 tgtccggtagaaattttctttcaacttaagcgttactttcttatcacataaaacataacagactattctctatttcaaccacccaacttgaatacgatga 29817248  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     ||||||||||   ||||| ||||||||    
T  29817247 tttacatctgccgttatttatccgtcat 29817220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 48221608 - 48221500
Alignment:
Q  23 ttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctattt 122  Q
    |||||||| ||  |||||||| |||| |||||||||   |||| |||||| ||||||||||| |||| |||||| |||||  |||||| |||||||| ||    
T  48221608 ttcaacttgagcagtactttcgtatcacacaaaacattggaggttcttcttcatttcaaccatccagtttgaattcgatgatttacatatgcttctactt 48221509  T
Q  123 ctccgtcat 131  Q
    ||| |||||    
T  48221508 ctctgtcat 48221500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 40674556 - 40674634
Alignment:
Q  8 cgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacc 86  Q
    |||||||| ||||||||||||||||| | |||||||||||| || |||||| |  || |||||| ||| ||||||||||    
T  40674556 cgatagaattttcctttcaacttaagtgatactttcttatcacataaaacatctcagactcttccccacttcaaccacc 40674634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 26490101 - 26490033
Alignment:
Q  63 aggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcat 131  Q
    ||||| |||| ||| |||||||| || ||| |||| ||||  |||||||||||||||||||||||||||    
T  26490101 aggctattcttcatctcaaccactcaacttcaatatgatgatttacatctgcttctatttctccgtcat 26490033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 50632442 - 50632542
Alignment:
Q  26 aacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctc 125  Q
    ||||| || |||||||||| ||| || |||||||   |||| || |||||| |||||||||||| |||||| | |||| || ||||| |||||||| |||    
T  50632442 aacttgagtggtactttctcatcacataaaacacttaaggcactcctccatctcaaccacccaggttgaattctatggtttccatctacttctattgctc 50632541  T
Q  126 c 126  Q
    |    
T  50632542 c 50632542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 3e-59; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 30202569 - 30202696
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  30202569 tgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccggcttgaatacgatgg 30202668  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
    ||||||||||||||||||||||||||||    
T  30202669 cttacatctgcttctatttctccgtcat 30202696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 43240819 - 43240947
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  43240819 ctgtccgatagaactttcctttcaacttaagtggtactttcttattgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatg 43240918  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    ||||||||||||||| |||||||||||||    
T  43240919 gcttacatctgcttccatttctccgtcat 43240947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 49347831 - 49347959
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49347831 ctgtccgatagatttttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatg 49347930  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    ||||||| |||||||||||||||||||||    
T  49347931 gcttacacctgcttctatttctccgtcat 49347959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 51601904 - 51601774
Alignment:
Q  1 tactgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacga 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |||||||| ||||| ||||||||||||||||||||    
T  51601904 tactgtccgatagaactttcatttcaacttaaggggtactttcttatcgaacaaaacacctgagactcttctctatttccaccacccagcttgaatacga 51601805  T
Q  101 tggcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||||||||||||||    
T  51601804 tggcttacatctgcttctatttctccgtcat 51601774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 1210589 - 1210461
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  1210589 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctcaggctcttcttcatttcaaccacccagcttgaatacgatg 1210490  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    |||||||||||||| ||||||||| ||||    
T  1210489 gcttacatctgcttttatttctccatcat 1210461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 51441203 - 51441330
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||    
T  51441203 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgca-aaaacacttgaggctcttctccatttcaaccacccagcttgaatatgatg 51441301  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    ||||| |||||||||||||||||||||||    
T  51441302 gcttagatctgcttctatttctccgtcat 51441330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 8671763 - 8671636
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||     
T  8671763 tgtctgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgagtctcttctccattttaaccacccagcttgaatacgatga 8671664  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
    ||||||||||||||||||||| ||||||    
T  8671663 cttacatctgcttctatttcttcgtcat 8671636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 9592577 - 9592463
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  9592577 tgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacccgagactcttctccatttcaaccacccaacttgaatacgatgg 9592478  T
Q  104 cttacatctgcttct 118  Q
    ||||| |||||||||    
T  9592477 cttacctctgcttct 9592463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 32083184 - 32083311
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||| |||||||||||||||||| |||||| ||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||     
T  32083184 tgtctgatagaactttcctttcagcttaagtggtactttcttatcgcatagaacacctgaggctcttctccatttcaaccacccagcttgaatacgatga 32083283  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||| ||| ||||||||||||||||    
T  32083284 tttacatttgcctctatttctccgtcat 32083311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 22089938 - 22089826
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  22089938 ctgtccgatagaactttcctttcaacttaagtggtattttcttattgcacaaaacatctgagactcttctccatttcaaccacccagcttgaatacgatg 22089839  T
Q  103 gcttacatctgct 115  Q
     ||||||||||||    
T  22089838 acttacatctgct 22089826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 27445738 - 27445614
Alignment:
Q  7 ccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggctt 106  Q
    ||||||||||||||||||||| ||||| |||||||||||||| || ||||||| ||   ||||||||||||||||||| ||| |||||||||||||  ||    
T  27445738 ccgatagaactttcctttcaatttaagtggtactttcttatcacataaaacactcggaactcttctccatttcaaccaaccaacttgaatacgatgattt 27445639  T
Q  107 acatctgcttctatttctccgtcat 131  Q
    |||||||||||||||||||| ||||    
T  27445638 acatctgcttctatttctccatcat 27445614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 19936366 - 19936238
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||||||| || ||||||||||  ||||| |||||||||||||| || |||||||  |||| |||| |||||||||||||||||||||||||||||||    
T  19936366 ctgtccgatataattttcctttcattttaagcggtactttcttatcacataaaacacttgaggttcttatccatttcaaccacccagcttgaatacgatg 19936267  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
      |||||| ||||||||||||||| ||||    
T  19936266 atttacatatgcttctatttctccttcat 19936238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 8391614 - 8391525
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagctt 92  Q
    |||||||||| ||| ||||||| | |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8391614 ctgtccgataaaacattcctttaagcttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccagctt 8391525  T

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Target: chr1; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 34827541 - 34827668
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||| ||| || ||||||||||| |||||  ||||||||||||| || |||||||  |||||||||||||||||||||||  || ||||||||| |||     
T  34827541 tgtccaatataattttcctttcaatttaagcagtactttcttatcacataaaacacatgaggctcttctccatttcaaccattcaacttgaatacaatga 34827640  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||| ||||||||||||||||||||    
T  34827641 tttacatatgcttctatttctccgtcat 34827668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 37463306 - 37463431
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||| ||||||| ||||||||||||||||   || ||||||||||  ||  ||||||  |||||||||||||| ||||||||| ||||| ||||| |||     
T  37463306 tgtctgatagaattttcctttcaacttaatcagtgctttcttatc--acctaacacctaaggctcttctccatatcaaccacctagcttaaatacaatga 37463403  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
      ||||||||||||||||||||||||||    
T  37463404 tatacatctgcttctatttctccgtcat 37463431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 51234444 - 51234330
Alignment:
Q  17 tttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgctt 116  Q
    ||||| |||||||| || ||| ||||| |||| || |||| ||| |||||| |||||||||||||||||||| |||||||  ||||  ||||||||||||    
T  51234444 tttcccttcaacttgagcggtgctttcgtatcacataaaagacctgaggctattctccatttcaaccacccaacttgaatttgatgatttacatctgctt 51234345  T
Q  117 ctatttctccgtcat 131  Q
    | |||||||| ||||    
T  51234344 caatttctccatcat 51234330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 32404967 - 32405066
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaa-cacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||||||||| ||||| |||||||| || ||| ||||| ||||||| |||| |||||||||||| | ||||||||||||||| || ||||||| ||||    
T  32404967 tgtccgatagaattttcccttcaacttgagtggtcctttcgtatcgcataaaaacacccgaggctcgtatccatttcaaccacctagattgaatatgatg 32405066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 32066761 - 32066837
Alignment:
Q  55 aacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcat 131  Q
    |||||| ||||||||||||||||| ||||| ||| |||||||||||||  |||||| ||||| |||||||| |||||    
T  32066761 aacacctgaggctcttctccattttaaccatccaacttgaatacgatgatttacatttgcttttatttctctgtcat 32066837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 52739968 - 52740032
Alignment:
Q  66 ctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtca 130  Q
    ||||||||||||||||||| ||| ||||| || |||| ||||||||| |||||||||||||||||    
T  52739968 ctcttctccatttcaaccatccaacttgagtaagatgacttacatctacttctatttctccgtca 52740032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 9599838 - 9599917
Alignment:
Q  9 gatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccaccca 88  Q
    ||||||| |||| |||||||| ||| |||||||||||||| || |||||||  ||||||||| ||||||| |||||||||    
T  9599838 gatagaattttcatttcaactgaagcggtactttcttatcacataaaacacttgaggctcttatccatttaaaccaccca 9599917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 46226721 - 46226847
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||| ||||||| ||| |||||||||||||   |||||||||| | || |||||||  || |||||||||||||||||||| ||| ||||||||| ||      
T  46226721 tgtctgatagaatttttctttcaacttaagcactactttcttagcacataaaacacttgatgctcttctccatttcaaccatccaacttgaatacaat-a 46226819  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||||||||| | ||||||| ||||    
T  46226820 tttacatctgcttttgtttctccatcat 46226847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 696113 - 696069
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttat 47  Q
    |||||||||||||||||||||||| |||||| |||||||||||||    
T  696113 ctgtccgatagaactttcctttcagcttaagtggtactttcttat 696069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 15085778 - 15085728
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcaca 53  Q
    ||||| |||||||||||||||||| |||||| ||| |||||||||||||||    
T  15085778 ctgtctgatagaactttcctttcagcttaagtggtgctttcttatcgcaca 15085728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 7921702 - 7921649
Alignment:
Q  72 tccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctc 125  Q
    ||||||||||| ||||| ||||||| |||||| |||||||| ||||||||||||    
T  7921702 tccatttcaacaacccaacttgaattcgatggtttacatctccttctatttctc 7921649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 28528375 - 28528302
Alignment:
Q  53 aaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctcc 126  Q
    |||||||| ||||| || ||| ||||||||||||||||| | || |||||| ||||| || |||||||||||||    
T  28528375 aaaacacctgaggcactcctcaatttcaaccacccagctcggattcgatggtttacacctccttctatttctcc 28528302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 35828892 - 35828957
Alignment:
Q  64 ggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtc 129  Q
    ||||||| |||||||||||||| ||| | |||| |||||  |||||| ||||||||||||||||||    
T  35828892 ggctcttttccatttcaaccacacagatcgaattcgatgatttacatatgcttctatttctccgtc 35828957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 12807539 - 12807651
Alignment:
Q  18 ttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttc-aaccacccagcttgaatacgatggcttacatctgctt 116  Q
    ||||||||||||| || ||||||||| |||| || || |||   |||||||||||||||||| ||||||| ||  | ||| |||||  ||||||| ||||    
T  12807539 ttcctttcaacttgagtggtactttcatatcacataagacattagaggctcttctccatttcaaaccacctagaataaattcgatgatttacatcagctt 12807638  T
Q  117 ctatttctccgtc 129  Q
    |||||||| ||||    
T  12807639 ctatttcttcgtc 12807651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 39140358 - 39140310
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgca 51  Q
    ||||||||||||| || |||||||| ||||| |||||||||||||||||    
T  39140358 ctgtccgatagaatttgcctttcaatttaagcggtactttcttatcgca 39140310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 41560274 - 41560235
Alignment:
Q  9 gatagaactttcctttcaacttaaggggtactttcttatc 48  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  41560274 gatagaattttcctttcaacttaagcggtactttcttatc 41560235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 2708 - 2836
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2708 ctgtccgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatg 2807  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
     ||||||||||||||||||||| ||||||    
T  2808 acttacatctgcttctatttcttcgtcat 2836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 5631661 - 5631534
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  5631661 tgtccgatagaattttcctttcagcttaagtggtactttcttatcgcacaaaacacccgagactcttctccatttcaaccacccagcttgaatacgatga 5631562  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||||||||||||||||||||||||    
T  5631561 tttacatctgcttctatttctccgtcat 5631534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 20428074 - 20428200
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20428074 ctgtccaatagaactttcctttcagcttaagtggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttggatacgatg 20428173  T
Q  103 gcttacatctgcttctatttctccgtc 129  Q
      |||||||||||||||||| ||||||    
T  20428174 atttacatctgcttctatttttccgtc 20428200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 9706620 - 9706492
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  9706620 ctgttcgatagaactttcctttcagcttaagtggtactttcttatcgcacaaaacacctgatgctcttctccatttcaaccacccagcttgaatacgatg 9706521  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
      ||||| |||||||||||||||| ||||    
T  9706520 atttacacctgcttctatttctccatcat 9706492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 10100293 - 10100419
Alignment:
Q  1 tactgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacga 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  10100293 tactgtccgatagaactttcctttcaacttaagtggtactttcttatctcacaaaacacatgaggctcttctccattccaaccacccagcttgaatacga 10100392  T
Q  101 tggcttacatctgcttctatttctccg 127  Q
    ||  ||| ||| |||||||||||||||    
T  10100393 tgatttatatcagcttctatttctccg 10100419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 5258589 - 5258716
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||||||||||||||||||||| |||||| |||||||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||     
T  5258589 tgtccgatagaactttcctttcagcttaagtggtactttctcatcgcaaaaaacacatgaggctcttctccatttcaaccacccagcttgaatacgatga 5258688  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
      |||||| |||||||||||||||||||    
T  5258689 tgtacatcagcttctatttctccgtcat 5258716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 608003 - 607904
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||||||||||| ||||||  ||||| |||  | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  608003 ctgtccgatagaacttttctttcagtttaagtggtcatgtcttatcgcacaaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatg 607904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 2689500 - 2689374
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    ||||||||| |||||||||||||||||||||  || |||||||||| ||||||| ||  ||||| |||||||||||||| || ||||||||| |||||||    
T  2689500 ctgtccgattgaactttcctttcaacttaagtagtgctttcttatcacacaaaatacatgaggcacttctccatttcaatcatccagcttgactacgatg 2689401  T
Q  103 gcttacatctgcttctatttctccgtc 129  Q
      ||||||||| |||||||||||||||    
T  2689400 atttacatctgattctatttctccgtc 2689374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 30679317 - 30679220
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgat 101  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||| ||||||||| ||| |||||||| |||||||||||||| ||||||||||||    
T  30679317 tgtctgatagaactttcctttcaacttatgtggtactttcttatcgctcaaaacacctgagcctcttctctatttcaaccacccaacttgaatacgat 30679220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 33496025 - 33495916
Alignment:
Q  19 tcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttct 118  Q
    |||||| |||||||| |||||||||||||| ||||||||| | ||| ||||||||||||||||||| |||||||||||| ||||  |||||| |||||||    
T  33496025 tcctttaaacttaagtggtactttcttatcacacaaaacatctgagactcttctccatttcaaccatccagcttgaatatgatgagttacatatgcttct 33495926  T
Q  119 atttctccgt 128  Q
    ||||||||||    
T  33495925 atttctccgt 33495916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 14030649 - 14030558
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaa 95  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||| |||||    
T  14030649 tgtccgatagaactttcatttcagcttaagtggtactttcttatcgcacaaaacacctgagactattctccatttcaaccacccagtttgaa 14030558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 6056209 - 6056336
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    |||||||||||| | ||||||||||||||  | || |||||||||||| |||||||  || |||||||| ||||||||||||||| ||||  ||||||      
T  6056209 tgtccgatagaattatcctttcaacttaaatgatattttcttatcgcataaaacacttgaagctcttctacatttcaaccacccaacttgcctacgatat 6056308  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||| ||||||||||||| ||||||    
T  6056309 tttacatatgcttctatttcttcgtcat 6056336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 2065195 - 2065294
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacaccc-gaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||||||||||| |||||||||||||||||  |||||||||||||  | |||||||||  || ||||| ||||||||||| || || |||||||||||||    
T  2065195 tgtccgatagaagtttcctttcaacttaagatgtactttcttatcaaataaaacacccaaagtctcttttccatttcaacaacacatcttgaatacgatg 2065294  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 6641881 - 6641970
Alignment:
Q  36 gtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctc 125  Q
    |||||||| |||| || |||||||||||||   | |||||||||||||||||| ||| ||| | |||| |||||||| ||||||||||||    
T  6641881 gtactttcatatcacataaaacacccgaggtcatcctccatttcaaccacccaactttaattcaatggtttacatctccttctatttctc 6641970  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 12134339 - 12134421
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacc 86  Q
    |||| ||||| || || |||||||||||| | ||||||||| |||| |  ||||||| |||||||| |||||||||||||||||    
T  12134339 ctgttcgataaaatttccctttcaactta-gtggtactttcgtatcacttaaaacactcgaggctcctctccatttcaaccacc 12134421  T

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Target: scaffold0018 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 31312 - 31184
Alignment:
Q  3 ctgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatg 102  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  31312 ctgttcgatagaactttcctttcaacttaagtggtactttcttatcgcacaaaacacttgaggctcttctccatttcaaccacccagcttgaatacgatg 31213  T
Q  103 gcttacatctgcttctatttctccgtcat 131  Q
    || ||||||| ||| ||||||||||||||    
T  31212 gcctacatctacttttatttctccgtcat 31184  T

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Target: scaffold0024 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 82564 - 82437
Alignment:
Q  4 tgtccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatgg 103  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||     
T  82564 tgtccgatagaactttcctttcaacttaaggagtactttcttatcgcacaaaacacatgaggctctttcccattgcaaccacccagcttgaatacgatga 82465  T
Q  104 cttacatctgcttctatttctccgtcat 131  Q
     |||||||||||||||||||||||||||    
T  82464 tttacatctgcttctatttctccgtcat 82437  T

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Target: scaffold0113 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 12040 - 12164
Alignment:
Q  7 ccgatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggctt 106  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| ||||||||| |||||||||||||    
T  12040 ccgataaaactttccttttaacttaagaggtactttcttatcgcacaaaacacttgaggttcttctccatttcaacgacccagcttaaatacgatggctt 12139  T
Q  107 acatctgcttctatttctccgtcat 131  Q
    |||| ||||||||||||||||||||    
T  12140 acatatgcttctatttctccgtcat 12164  T

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Target: scaffold1493 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 29 - 153
Alignment:
Q  9 gatagaactttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaacca--cccagcttgaatacgatggctt 106  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||| ||  ||| ||||| ||||||||  ||    
T  29 gatagaactttcctttcaacttaattggtactttcttatcgcacaaaacacctgaggctcttctccatttcaaacaccccctgcttgcatacgatgattt 128  T
Q  107 acatctgcttctatttctccgtcat 131  Q
    |||| |||||||||||| |||||||    
T  129 acatatgcttctatttccccgtcat 153  T

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Target: scaffold0045 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 87061 - 87171
Alignment:
Q  17 tttcctttcaacttaaggggtactttcttatcgcacaaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgctt 116  Q
    |||| |||||||||||| | ||||||||||| ||| ||||| ||||||||| |||||||||||||||| | | | |||||| ||||  ||||||||| ||    
T  87061 tttcttttcaacttaagtgatactttcttattgcataaaacccccgaggcttttctccatttcaaccatcaaacatgaatatgatgagttacatctgatt 87160  T
Q  117 ctatttctccg 127  Q
    |||||||||||    
T  87161 ctatttctccg 87171  T

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