View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_258 (Length: 212)
Name: NF1408_low_258
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_258 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 18189310 - 18189180
Alignment:
| Q |
1 |
tctggcagcacacgcagcaacggatcctcatgcattccagaaccttctccgacctcacaacttgatctattcccctcaaccaagttaacattcccaccat |
100 |
Q |
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| T |
18189310 |
tctggtagcacacgcagcaacggatcctcatgcattccagaaccttctccgacctcacaacttgatctattcccctcaaccaatttaacattcccaccat |
18189211 |
T |
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| Q |
101 |
cttgaacaacttgagtttcagcatattcttc |
131 |
Q |
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| T |
18189210 |
cttgaacaacttgagtttcagcattttcttc |
18189180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 18189174 - 18189086
Alignment:
| Q |
32 |
gcattccagaaccttctccgacctcacaacttgatctattcccctcaaccaagttaacattcccaccatcttgaacaacttgagtttca |
120 |
Q |
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| T |
18189174 |
gcattccagaaccttctccgacctcacaaattgaattgttcccctcattcaagttaacatccccagcatttggagcaacttgagtttca |
18189086 |
T |
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