View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_259 (Length: 212)

Name: NF1408_low_259
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_259
NF1408_low_259
[»] chr3 (2 HSPs)
chr3 (33-183)||(47430776-47430929)
chr3 (33-109)||(50880063-50880138)
[»] chr1 (1 HSPs)
chr1 (33-100)||(17244585-17244652)
[»] chr7 (1 HSPs)
chr7 (33-94)||(37236194-37236255)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 47430929 - 47430776
Alignment:
Q  33 aaatcaaaagatgaaaaatccattctttt-caaaacaataaacaact---tgtcacaggttcaaaaattcaaacataaaaatcagacacctctcatgttt 128  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||||    ||||| ||||||||||| ||||||| |||||||| |||||||||||||||    
T  47430929 aaatcaaaagaagaaaaatccattatttttcaaaacaataaacaacaacgtgtcataggttcaaaaaatcaaacacaaaaatcaaacacctctcatgttt 47430830  T
Q  129 tttgggcagctctcaccaactctccctcctctgcaaaatctctctcacccgagtt 183  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  47430829 tttgggcagctctcacaaactctccctcctctg-taaatctctctcacccgagtt 47430776  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 50880063 - 50880138
Alignment:
Q  33 aaatcaaaagatgaaaaatccattcttttcaaaacaataaacaacttgtcacaggttcaaaaattcaaacataaaaa 109  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||  |||||| ||||||||| ||||||| |||||    
T  50880063 aaatcaaaagaagaaaaatccattattttcaaaacaataaaaaacgggtcacatgttcaaaaa-tcaaacacaaaaa 50880138  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 17244585 - 17244652
Alignment:
Q  33 aaatcaaaagatgaaaaatccattcttttcaaaacaataaacaacttgtcacaggttcaaaaattcaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||| |||||    
T  17244585 aaatcaaaagaagaaaaatccattcttttcaaaacaataaaaaaagtgtcacaggttcaaaatttcaa 17244652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 37236194 - 37236255
Alignment:
Q  33 aaatcaaaagatgaaaaatccattcttttcaaaacaataaacaacttgtcacaggttcaaaa 94  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  37236194 aaatcaaaagaagaaaaatccattcttttcaaaacaataaaaaaagtgtcacaggttcaaaa 37236255  T

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